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Protein Alignment CG18417 and Cpa1

DIOPT Version :9

Sequence 1:	NP_648119.1	Gene:	CG18417 / 38829	FlyBaseID:	FBgn0035780	Length:	427	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	445	Identity:	136/445 - (30%)
Similarity:	216/445 - (48%)	Gaps:	56/445 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 ILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELVKNASYYEVF------SELNAG 65
            :|.||.| |.|.....| :.|:::..:|      |..||..:.||.....|..      ....||
  Rat     4 LLILSLL-LEAVCGNEN-FVGHQVLRIS------AADEAQVQKVKELEDLEHLQLDFWRDAARAG 60

  Fly    66 NPGKIMVHPHEQVNFVQ-LMEENNVKYDIINRNVGLTLSRQ------FETNRMLRHWFPYNGRLG 123
            .|..:.| |...:..|: .:|.:.:.|:|:..:|.|.|..:      |:...:....|.|
  Rat    61 IPIDVRV-PFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEKQQMSAFQARALSTDSFNY----- 119

  Fly   124 TERYYNHEEINQFIEDLAGEHPRRVFLKTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAR 188
             ..|:..:||.:|::.|..|||:.|....:|.::|||.:..:..:.|..  |:..|.:|.|.|:|
  Rat   120 -ATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGT--NRPAIWIDTGIHSR 181

  Fly   189 EWISPAAATYLINQLV--YNLE-------DNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRK 244
            ||::.|:..:...::.  |..:       ||.|:.|:.      |.||||:.||.  :..|||||
  Rat   182 EWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEI------VTNPDGFAYTH--KTNRMWRK 238

  Fly   245 TRK-PSSSDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHSYVDRGQM- 307
            ||. ...|.|:|.|||||:|..:...|||.:||...|.|..|.||.|...:.|.:.|:   |.:
  Rat   239 TRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTSH---GNIK 300

  Fly   308 -YLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEATGTIYKIGPSATTINYAASGAS 371
             ::::|||..|:|||:|:|:.....:.:|.::|.:..:|:....||.:|.|....|| |.|||::
  Rat   301 AFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGSIIDTI-YQASGST 364

  Fly   372 DDYAFNAGFPISFTMEL-PFGGTGFDPPASDIDSIVKETWVGIAAMARKVIQKYP 425
            .|:.::.|...|||.|| ..|..||..|||.|....:|||:.:..:....: |:|
  Rat   365 IDWTYSQGIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLALLTIMDHTV-KHP 418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.