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Protein Alignment CG18417 and Cpb2

DIOPT Version :9

Sequence 1:	NP_648119.1	Gene:	CG18417 / 38829	FlyBaseID:	FBgn0035780	Length:	427	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	413	Identity:	126/413 - (30%)
Similarity:	201/413 - (48%)	Gaps:	34/413 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    27 GYKIYEVSSEARSVAFSEALSELVKNASYYEVFSELNAGNPGKIMVHPHEQVN-FVQLMEENNVK 90
            |:.:..:...:|.|...:.|:...:...:..|.:|         .:...::|: ||...:.|:||
  Rat    25 GHVLSALPRTSRQVQLLQNLTTTYEVVLWQPVTAE---------FIEKKKEVHFFVNASDVNSVK 80

  Fly    91 ---------YDIINRNVGLTLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPR 146
                     ::::..||...:.:|...:.:    .|.......|:|::..||..:||.:..:||.
  Rat    81 AYLNASRIPFNVLMNNVEDLIQQQTSNDTV----SPRASSSYYEQYHSLNEIYSWIEVITEQHPD 141

  Fly   147 RVFLKTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLINQLV-YNLEDN 210
            .:....:|.|||...|..:.: :|...|.||.|.:|.|.|||||||||...:.|..:. ::.::|
  Rat   142 MLQKIYIGSSYEKYPLYVLKV-SGKEHRVKNAIWIDCGIHAREWISPAFCLWFIGYVTQFHGKEN 205

  Fly   211 --ADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSSSD-CIGTDPNRNF-DFHWNEEGA 271
              ..||...|:.|:||:|.|||:||.  :..|||||.|....:: |:|||.|||| ..||.|:||
  Rat   206 TYTRLLRHVDFYIMPVMNVDGYDYTW--KKNRMWRKNRSVHMNNRCVGTDLNRNFASKHWCEKGA 268

  Fly   272 SDDPCDNIYAGAKPFSEPEALVVGDLIHSYVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLH 336
            |...|...|.|..|.||||...|.|.:...::..:.|:::|||...||:|:.:..:.....|:|.
  Rat   269 SSFSCSETYCGLYPESEPEVKAVADFLRRNINHIKAYISMHSYSQQILFPYSYNRSKSKDHEELS 333

  Fly   337 EVAAAGQSAIQEAT-GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMEL-PFGGTGFDPPA 399
            .||:....||:... .|.|..|..:.:: |.|.|.|||:.::.|...|||:|| ..|..||..|.
  Rat   334 LVASEAVRAIESINKNTRYTHGSGSESL-YLAPGGSDDWIYDLGIKYSFTIELRDTGRYGFLLPE 397

  Fly   400 SDIDSIVKETWVGIAAMARKVIQ 422
            ..|.....|....::.:|..||:
  Rat   398 RFIKPTCAEALAAVSKIAWHVIR 420

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.