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Protein Alignment CG8562 and Cpa2

DIOPT Version :9

Sequence 1:	NP_648118.1	Gene:	CG8562 / 38828	FlyBaseID:	FBgn0035779	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	427	Identity:	135/427 - (31%)
Similarity:	219/427 - (51%)	Gaps:	31/427 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 LVLFLGATL--VAAEQDYEGYRIYEVIPSTADQADLLHQLSLQGY---DFISETRLLGHPSRVIV 67
            |.|.|.|.|  :..::.:.|.::.|:|||..:|...|.||..:.:   ||.....:.|....|.|
  Rat     3 LTLLLAALLGYIYCQETFVGDQVLEIIPSHEEQIRTLLQLEAEEHLELDFWKSPTIPGETVHVRV 67

  Fly    68 SPAQLKHFQQLVEAEKMTLTLVNSNLGASIAEE----FAQRQMQRLLAPITGKGRLSTERYYTHE 128
            ..|.::..:..:|::.:..:::..::...:.:|    ...:|.:|       .|..:.|.|:|.|
  Rat    68 PFASIQAVKVFLESQGIDYSIMIEDVQVLLDQEREEMLFNQQRER-------GGNFNFEAYHTLE 125

  Fly   129 EIINYIDDLAQRFPSRVFVKTVGWSYEQRVLKTITITNGDGKANKKVIFMDGGFHAREWISPAAV 193
            ||...:|:|....|..|....:|.|:|.|.:..:..:.|   .:|..|::|.|.|||||::.|..
  Rat   126 EIYQEMDNLVAENPGLVSKVNIGSSFENRPMNVLKFSTG---GDKPAIWLDAGIHAREWVTQATA 187

  Fly   194 LYVIDQLVEQFEEN---AHLLKDYDWVILPLVNADGYEHTQTGTLARMWRKTRQPYTYAGQTCYG 255
            |:..:::...:..:   ..||...|..:||:.|.|||..:||..  |||||||.  ..:|..|.|
  Rat   188 LWTANKIASDYGTDPAITSLLNTLDIFLLPVTNPDGYVFSQTTN--RMWRKTRS--KRSGSGCVG 248

  Fly   256 ADPNRNFDFHWNEEGASSNPCADTYAGPTAFSEPETITVRDLMHSLADRGIM--YLTLHSYGNYL 318
            .|||||:|.::...||||:||:|:|.||...||.|..::.|.:.|   .|.:  ::|||||...|
  Rat   249 VDPNRNWDANFGGPGASSSPCSDSYHGPKPNSEVEVKSIVDFIKS---HGKVKAFITLHSYSQLL 310

  Fly   319 LYPWGWTSDLPENWEDLDAVARTGAEAIENATGTVYTYGSSTNVLYIAAGASDDYGYYAGFNVSI 383
            ::|:|:....|:::.:||.||:..|:|::...||.|..|...:|:|.|:|.|.|:.|..|...|.
  Rat   311 MFPYGYKCTKPDDFNELDEVAQKAAQALKRLHGTSYKVGPICSVIYQASGGSIDWAYDLGIKYSF 375

  Fly   384 TMELPGAGSIGFNPPVTRIDEFVTETWIGIRAMAEKV 420
            ..||...|..||..|..:|.....|||:|::.:.|.|
  Rat   376 AFELRDTGFYGFLLPAKQILPTAEETWLGLKTIMEHV 412

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.