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Protein Alignment CG8562 and Cpb2

DIOPT Version :9

Sequence 1:	NP_648118.1	Gene:	CG8562 / 38828	FlyBaseID:	FBgn0035779	Length:	424	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	441	Identity:	133/441 - (30%)
Similarity:	218/441 - (49%)	Gaps:	53/441 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 FSLGLLVLFLGATLVAAEQD---YEGYRIYEVIPSTADQADLLHQLSLQGY----------DFIS 54
            :.||:||     .::..|:.   ::...:...:|.|:.|..||..|:.. |          :||.
  Rat     4 YGLGVLV-----AIILYEKHGLAFQSGHVLSALPRTSRQVQLLQNLTTT-YEVVLWQPVTAEFIE 62

  Fly    55 ETRLLGHPSRVIVSPAQLKHFQQLVEAEKMTLTLVNSNLGASIAEEFAQRQMQR-LLAPITGKGR 118
            :.:.:    ...|:.:.:...:..:.|.::...::.:|:     |:..|:|... .::|     |
  Rat    63 KKKEV----HFFVNASDVNSVKAYLNASRIPFNVLMNNV-----EDLIQQQTSNDTVSP-----R 113

  Fly   119 LST---ERYYTHEEIINYIDDLAQRFPSRVFVKTVGWSYEQRVLKTITITNGDGKANKKVIFMDG 180
            .|:   |:|::..||.::|:.:.::.|..:....:|.|||:..|..:.::..:.:. |..|::|.
  Rat   114 ASSSYYEQYHSLNEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVSGKEHRV-KNAIWIDC 177

  Fly   181 GFHAREWISPAAVLYVIDQLVEQF--EENAH--LLKDYDWVILPLVNADGYEHTQTGTLARMWRK 241
            |.|||||||||..|:.|. .|.||  :||.:  ||:..|:.|:|::|.|||::|....  |||||
  Rat   178 GIHAREWISPAFCLWFIG-YVTQFHGKENTYTRLLRHVDFYIMPVMNVDGYDYTWKKN--RMWRK 239

  Fly   242 TRQPYTYAGQTCYGADPNRNF-DFHWNEEGASSNPCADTYAGPTAFSEPETITVRDLMHSLADRG 305
            .|.  .:....|.|.|.|||| ..||.|:||||..|::||.|....||||...|.|.:....:..
  Rat   240 NRS--VHMNNRCVGTDLNRNFASKHWCEKGASSFSCSETYCGLYPESEPEVKAVADFLRRNINHI 302

  Fly   306 IMYLTLHSYGNYLLYPWGWTSDLPENWEDLDAVARTGAEAIENAT-GTVYTYGSSTNVLYIAAGA 369
            ..|:::|||...:|:|:.:.....::.|:|..||.....|||:.. .|.||:||.:..||:|.|.
  Rat   303 KAYISMHSYSQQILFPYSYNRSKSKDHEELSLVASEAVRAIESINKNTRYTHGSGSESLYLAPGG 367

  Fly   370 SDDYGYYAGFNVSITMELPGAGSIGFNPPVTRIDEFVTETWIGIRAMAEKV 420
            |||:.|..|...|.|:||...|..||..|    :.|:..|.....|...|:
  Rat   368 SDDWIYDLGIKYSFTIELRDTGRYGFLLP----ERFIKPTCAEALAAVSKI 414

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.