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Protein Alignment CG8563 and Cpa2

DIOPT Version :9

Sequence 1:	NP_001261515.1	Gene:	CG8563 / 38826	FlyBaseID:	FBgn0035777	Length:	440	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	407	Identity:	127/407 - (31%)
Similarity:	204/407 - (50%)	Gaps:	37/407 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    41 ENAFKYMVDLQTND-AELDFWLLTRNSSVLTVSPRRKTQFEASLSSLGVSYEMQPLMELMAALQA 104
            |...:.::.|:..: .|||||   ::.::...:...:..| ||:.::.|..|.|.:
  Rat    33 EEQIRTLLQLEAEEHLELDFW---KSPTIPGETVHVRVPF-ASIQAVKVFLESQGI--------- 84

  Fly   105 NSSFADDNYDGEYEECQQDECEQAERPRRRTRRQARGFFSHYPRYH---EVLSFMSGLAARYPQF 166
                   :|....|:.|....::.|......:|:..|.| ::..||   |:...|..|.|..|..
  Rat    85 -------DYSIMIEDVQVLLDQEREEMLFNQQRERGGNF-NFEAYHTLEEIYQEMDNLVAENPGL 141

  Fly   167 CRYESLGRSNEGRHIAALSISLNSRVRPRRVAYIQAATHGREWITTQTVLYLAYELLSNL---RA 228
            ....::|.|.|.|.:..|..|...   .:...::.|..|.|||:|..|.|:.|.::.|:.   .|
  Rat   142 VSKVNIGSSFENRPMNVLKFSTGG---DKPAIWLDAGIHAREWVTQATALWTANKIASDYGTDPA 203

  Fly   229 FTRVLQDVEIFLVPLVNPDGYEYTHTTDRFWRKNRHRYAGHSCSGVDINRNFGNHWNYQGASQNL 293
            .|.:|..::|||:|:.|||||.::.||:|.|||.|.:.:|..|.|||.|||:..::...|||.:.
  Rat   204 ITSLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSKRSGSGCVGVDPNRNWDANFGGPGASSSP 268

  Fly   294 CSEVYSGTAPNSEPETSAVVRYLEFNRNRVKLSLDVHSFGKFIFYPYGYAKNTVPPTVGTLRSVA 358
            ||:.|.|..||||.|..::|.::: :..:||..:.:||:.:.:.:|||| |.|.|.....|..||
  Rat   269 CSDSYHGPKPNSEVEVKSIVDFIK-SHGKVKAFITLHSYSQLLMFPYGY-KCTKPDDFNELDEVA 331

  Fly   359 LRAANQIGRYRGTRYTTGTSASILYEASGSLDDFAYGNLGIPLSYTLELPGDEFH---VPAHDII 420
            .:||..:.|..||.|..|...|::|:|||...|:|| :|||..|:..||....|:   :||..|:
  Rat   332 QKAAQALKRLHGTSYKVGPICSVIYQASGGSIDWAY-DLGIKYSFAFELRDTGFYGFLLPAKQIL 395

  Fly   421 HVCKETFAGFIEFIRHV 437
            ...:||:.|....:.||
  Rat   396 PTAEETWLGLKTIMEHV 412

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.