back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG8564 and Cpa1

DIOPT Version :9

Sequence 1:	NP_001261514.1	Gene:	CG8564 / 38825	FlyBaseID:	FBgn0035776	Length:	520	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	382	Identity:	100/382 - (26%)
Similarity:	173/382 - (45%)	Gaps:	45/382 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    16 VERLHLNIKCQTAKDRSRTDATTALRRLVIPRPDILHTYLDYKQVNQYLQYLAQRYAHFVHVHIL 80
            :|.|.|:.    .:|.:|......:|   :|.|.|       :.|..:|:|....|...:....|
  Rat    45 LEHLQLDF----WRDAARAGIPIDVR---VPFPSI-------QSVKAFLEYHGISYEIMIEDVQL 95

  Fly    81 GHTHEKREIRALEINWMNSENVELSPQ-------------MREHSPRLFDIGPNGRFTVPVIHV- 131
            ....||:::.|.:...:::::...:..             :.||...:..|.....|....|||
  Rat    96 LLDEEKQQMSAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVL 160

  Fly   132 ----GEHCRKTVFIEAGTHAREWISVSTALNCIYQLTERYTRN---IEVLRKLRFIIVPLVNPDG 189
                |...|..::|:.|.|:|||::.::.:....::|:.|.::   ..||..:...:..:.||||
  Rat   161 KFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDG 225

  Fly   190 YEYSRTKNPKWRKNRRPHKSAKFVGTDCNRNYDIFWNSGPSKIN--RNTYKGESPFSEPETRAMR 252
            :.|:...|..|||.|...:.:..||.|.|||:|..:....:..|  ..||:|:.|.||.|.::
  Rat   226 FAYTHKTNRMWRKTRSHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRGKFPNSEVEVKS-- 288

  Fly   253 CILDRMSS--NLLFFLSLHSYGQSIMYPWGYCRDNPIYWRELSSLANSGKSAIKSYNGREYRTGS 315
             |:|.::|  |:..|:|:|||.|.::||:||..:......||..||.|..:|:.|.:|.:::.||
  Rat   289 -IVDFVTSHGNIKAFISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTALTSLHGTKFKYGS 352

  Fly   316 ISCLTKRTIAGSVVDYVYGVLKVPMALVMELPSREL-GFQPPVEMISQIGHESWYGI 371
            | ..|....:||.:|:.|. ..:..:...||....| ||..|...|.....|:|..:
  Rat   353 I-IDTIYQASGSTIDWTYS-QGIKYSFTFELRDTGLRGFLLPASQIIPTAEETWLAL 407

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.