DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and TRIP13

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_004228.1 Gene:TRIP13 / 9319 HGNCID:12307 Length:432 Species:Homo sapiens


Alignment Length:391 Identity:90/391 - (23%)
Similarity:149/391 - (38%) Gaps:91/391 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 DAAMDVDNVAP---EEPKKAVE-QEVDSSSSNDEYYEPTLAELTN-----FLDNPPEEFADPNF- 630
            :|..|:....|   |.|...|| .:..||::..|....::.:|.|     |.|....||.:|.. 
Human     3 EAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTEFDEPFLT 67

  Fly   631 ----CLTLIDFVDAIKVMQP-------------------------SAKREGFI-----TVPDT-- 659
                .:::||....:|..||                         ..:.|..|     .:|..  
Human    68 RNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEF 132

  Fly   660 --TWDDIGALEKIREELKLAVLAPVKYPEMLERLGL-TAPSGVLLCGPPGCGKTLLAKAIANEAG 721
              .||.:....:::..|...|:..:.:.:......| |....|||.||||.|||.|.||:|.:..
Human   133 HGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLT 197

  Fly   722 I---------NFISVKGPELMNMYVGESERAVRACFQRARN-----SAPCVIFFDEFDSLCPKRS 772
            |         ..|.:....|.:.:..||.:.|...||:.::     .|...:..||.:||...|:
Human   198 IRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARN 262

  Fly   773 --DGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQ- 834
              ..|...:...|:||.:||::|.::....|.||..:|..:.||.|.:  .|.|...|:|.|.. 
Human   263 ACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAA 325

  Fly   835 -------SERTEILKATTKNGKRPVLA-----------DDVD-----LDEIAAQTEGYTGADLAG 876
                   |...|::|......::.:|.           ::|.     |::|:.::||.:|..|..
Human   326 AIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLNDISRKSEGLSGRVLRK 390

  Fly   877 L 877
            |
Human   391 L 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 90/391 (23%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 14/37 (38%)
AAA 699..830 CDD:278434 45/146 (31%)
TRIP13NP_004228.1 SpoVK <136..360 CDD:223540 57/225 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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