DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and YTA6

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_015251.1 Gene:YTA6 / 856031 SGDID:S000005995 Length:754 Species:Saccharomyces cerevisiae


Alignment Length:864 Identity:221/864 - (25%)
Similarity:338/864 - (39%) Gaps:212/864 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 VAAKKVAKPNTIHVSSSEAIQKLHQVVGNRAKNLSE---------DAVPRSKDHRNVPGLYQQLH 226
            :|.:|.:.|....::.|  :|.|:.||.|:.|||::         |.|...|.|:|:..|...::
Yeast     1 MAHEKFSIPENFTLAQS--LQLLYSVVKNQYKNLADLIINSKGNKDTVTYGKIHKNLDTLLVYVN 63

  Fly   227 QNQSRDRLRKFKR---------DLEVQHP-----TESFRDIGGMDSTLKELCEMLI--HIKSPEF 275
            :.     |||.::         :|.|.||     .|.|:.:|......:...|.|:  ...||. 
Yeast    64 EG-----LRKIEKTYTLKKGLGNLVVDHPELRSIIEDFQILGQDIRIARRKAETLMAEGNGSPS- 122

  Fly   276 YFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAI 340
                  |.|...:|....|.|..|......|..:..|.|....|.......::..|.|:      
Yeast   123 ------LSSSSSVLGLGTGNGLRFPKLWRMGSKRDKLKEADEKEAKINKQADNIRRARK------ 175

  Fly   341 GYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPG 405
                    ::|...:|...|: .:|:|.:     ...|..||..|..:..|.       ..|:. 
Yeast   176 --------LEEEKKLGAKLQY-ERDLELQ-----REKLIELKVKEKVEFEVA-------QKLEE- 218

  Fly   406 LRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAA-- 468
             .|:.|.:.|       ||.|.:..:.:...|..:.|.||...|.|       |..:..|:::  
Yeast   219 -ERVKREEEE-------RKHREQAEKKRISTLKHERKTNYKSRASL-------DNFSSSSKSSGK 268

  Fly   469 --SVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGD 531
              :..:||||                   ||....|.:...|||  .|..|.|:...|.|.....
Yeast   269 IDNSLIKRRS-------------------LDVVRTSGERVRTPV--RKSMEAAEIGMAAQLAWSQ 312

  Fly   532 KETSA---KDKSEGDSPN------IETP--------KKATNGNSSIKSP---QKTPKKSAEKPTD 576
            .:..|   |..:.|...|      ..||        ||.|.....||||   ::..|.|...||:
Yeast   313 YQNGANHSKVSNNGSHSNELQIRYKPTPPLKKRYDYKKPTVNRPIIKSPTLNRQNSKSSRNIPTN 377

  Fly   577 AAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELT-----------------------NFL 618
            :.:........:..:..||.::.||       |.|...|                       :.|
Yeast   378 SKLKASKSNTNKVSRRNEQNLEPSS-------PVLVSATAVPAESKPMRSKSGTPDKESSASSSL 435

  Fly   619 DNPPEEF------ADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLA 677
            |:..|:.      .|.|.|..:::              |..:|.....|:||..|...:..||.|
Yeast   436 DSRKEDILKSVQGVDRNACEQILN--------------EILVTDEKVYWEDIAGLRNAKNSLKEA 486

  Fly   678 VLAPVKYPEMLERLGLTAP-SGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 741
            |:.|...|::.:  ||..| .|:||.||||.|||::|||:|.|:...|.||....|::.|:||||
Yeast   487 VVYPFLRPDLFK--GLREPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESE 549

  Fly   742 RAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV-------EERK 799
            :.|||.|..|:..:|.:||.||.||:...|||  :.|.|..||..:||.:...:       |:|.
Yeast   550 KLVRALFYMAKKLSPSIIFIDEIDSMLTARSD--NENESSRRIKTELLIQWSSLSSATAQSEDRN 612

  Fly   800 G-----VYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILK---ATTKNGKRPVLADD 856
            .     |.:|.|||.|..||.|..|  |....||:..|:...|...||   |..||.     ..|
Yeast   613 NTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNS-----LQD 670

  Fly   857 VDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGD----TNLDDL-CVRSQHFQEALQQLRP 916
            :|.:.|...|||::|:||..|.|:|:|..:|   :.||    .:.|.: .:..:.||.||..::.
Yeast   671 LDYELITEMTEGFSGSDLTSLAKEAAMEPIR---DLGDKLMFADFDKIRGIEIKDFQNALLTIKK 732

  Fly   917 SVNEQDRKIYDKLRLKYAA 935
            ||:.:..:.|::...|:.:
Yeast   733 SVSSESLQKYEEWSSKFGS 751

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 188/721 (26%)
AAA 287..418 CDD:278434 24/130 (18%)
P-loop_NTPase 679..>716 CDD:304359 17/37 (46%)
AAA 699..830 CDD:278434 59/142 (42%)
YTA6NP_015251.1 SpoVK 201..747 CDD:223540 170/624 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.