DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and PEX1

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_012724.1 Gene:PEX1 / 853636 SGDID:S000001680 Length:1043 Species:Saccharomyces cerevisiae


Alignment Length:820 Identity:212/820 - (25%)
Similarity:338/820 - (41%) Gaps:252/820 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GSAL-KRLMEEVPEIAVAAKK------VAKPNTIHVSSSEAIQ-KLHQVVGNRAKNLSEDAVPRS 212
            ||.| ..|:....:|.:..||      :...|.|   |:|::| |:.|:.....|::.|..:|: 
Yeast   353 GSLLTNNLILPTEQIIIEIKKGESEQQLCNLNEI---SNESVQWKVTQMGKEEVKDIIERHLPK- 413

  Fly   213 KDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYF 277
              |.:|                   |...||...::...|...::|..|   ||:.::.||    
Yeast   414 --HYHV-------------------KETGEVSRTSKDEDDFITVNSIKK---EMVNYLTSP---- 450

  Fly   278 QLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMP---LMEIPATELIGGISG--ESEERIREVFD 337
               ::.:..::|.|..|.|||.|.:.:..:::..   .::....|.:...|.  ::::.|.|...
Yeast   451 ---IIATPAIILDGKQGIGKTRLLKELINEVEKDHHIFVKYADCETLHETSNLDKTQKLIMEWCS 512

  Fly   338 QAIGYSPCVLFIDEIDAIGG-----------NRQWASKDMERRIVSQLISSLDNLKANEFGQSVV 391
            ....|.|.::.:|.::|:.|           |.||   |...::::..|:.:..: .|:..:.:.
Yeast   513 FCYWYGPSLIVLDNVEALFGKPQANDGDPSNNGQW---DNASKLLNFFINQVTKI-FNKDNKRIR 573

  Fly   392 VIAATTRPDVLDPGLRRIGRFDHEI-----AIHIPSRKERREILRIQCEGLSVDPKLNYDKIAEL 451
            |:.:..:...::|.|     ||...     ::..|.:..|.::|.                    
Yeast   574 VLFSGKQKTQINPLL-----FDKHFVSETWSLRAPDKHARAKLLE-------------------- 613

  Fly   452 TPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVP-DSKG 515
               |..:              |.:.||..|:|..:            |...|..|.:|:. :...
Yeast   614 ---YFFS--------------KNQIMKLNRDLQFS------------DLSLETEGFSPLDLEIFT 649

  Fly   516 EETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMD 580
            |:...|.:.|:                                                     |
Yeast   650 EKIFYDLQLER-----------------------------------------------------D 661

  Fly   581 VDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQ 645
            .|||        |.:|:.|.|                                       :....
Yeast   662 CDNV--------VTRELFSKS---------------------------------------LSAFT 679

  Fly   646 PSAKREGFITVPDTT--WDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCG 708
            |||.| |.....:|.  |.|||||...::.|...:..|.||..:.....|...||:||.|.||||
Yeast   680 PSALR-GVKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCG 743

  Fly   709 KTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSD 773
            |||||.|:|.:.|:|||||||||::|.::|.||:.:|..|:||::..||::|||||||:.|||  
Yeast   744 KTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKR-- 806

  Fly   774 GGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERT 838
            |.|......|:||||||:|||.|...||||||||:|||:||.|:|||||||..:....|.:|||.
Yeast   807 GHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERL 871

  Fly   839 EILKATTKN------GKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTN- 896
            :||:|...:      .|:..|..:.||..||.:|.|::||||.||...|.:.|:.:.|:..|.: 
Yeast   872 DILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNAYLKSVHRWLSAADQSE 936

  Fly   897 ----LDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLK 932
                .|::    ::|         |:||..|:..::||||
Yeast   937 VVPGNDNI----EYF---------SINEHGRREENRLRLK 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 178/682 (26%)
AAA 287..418 CDD:278434 27/151 (18%)
P-loop_NTPase 679..>716 CDD:304359 18/36 (50%)
AAA 699..830 CDD:278434 78/130 (60%)
PEX1NP_012724.1 PEX-1N 108..183 CDD:401267
SpoVK 457..929 CDD:223540 171/632 (27%)
RecA-like_PEX1_r2 705..862 CDD:410934 85/158 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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