DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and PCH2

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_009745.2 Gene:PCH2 / 852484 SGDID:S000000390 Length:564 Species:Saccharomyces cerevisiae


Alignment Length:476 Identity:95/476 - (19%)
Similarity:168/476 - (35%) Gaps:140/476 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   473 KRRSMKKFRE----LHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKD--AEAEQ----- 526
            |:.|.||..|    |.|..::.:.:...|..:.|...|:..:.:.:|....||  .||:|     
Yeast    37 KQNSNKKLGEFLNLLKAVVKRKLESFPKDRLKTSIITGQELMREGQGSIEIKDPPTEAQQHLIRS 101

  Fly   527 ----------KVDGDKETSAKDKSEGDS--------PNIETPKKATNGNSSIKSPQKTPKKSAEK 573
                      .::|...|    .:||..        ..|...:::|: :.||       |.:..:
Yeast   102 LAKVLLHQFSSINGKVNT----VNEGQDNLFLSLFVKKISIEQQSTS-HVSI-------KLNFHE 154

  Fly   574 PTDAAMDVDNVAPEEPKKAVEQEVDSSSSN--DEYYEPTLAELTNFLDNP------PEEFADPNF 630
            ..:....:|::            :||..:|  |.|:   :..:..|:..|      .:|..:.:.
Yeast   155 KINLGQHIDSI------------LDSEETNESDTYH---MGSVDEFIIYPFCCLEEQDELKNGSI 204

  Fly   631 CLTLIDFVDA------------------------IKVMQPSAKREGFITVPDTT----WDDIGAL 667
            ..|..|.:|.                        |.:.:.:........:|.||    |:.:...
Yeast   205 LSTEFDKIDLELDEDDGFEGETLNNCINSVGNFDIPLSKQTLNLVNISYLPGTTFEGQWESLYFG 269

  Fly   668 EKIREELKLAVLAPVKYPEMLERLGLTAPSG-------------VLLCGPPGCGKTLLAKAIANE 719
            ..|:|.|.......:|    :.|...|..|.             :|:.||||.|||.|.||:..:
Yeast   270 NNIKERLYSYATISLK----IARFKQTGDSNQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQK 330

  Fly   720 AGIN-----------------FISVKGPELMNMYVGESERAVRACFQ---------RARNSAPCV 758
            ..:.                 .|.:....:.:.:.|||.:.:...|:         ..|....|:
Yeast   331 LSVRREFSDGSDTIDTNYKGIIIELSCARIFSKWFGESSKNISIVFKDIEELLKVNEGRGIFICL 395

  Fly   759 IFFDEFDSLCPKRSDGGDGNNS--GTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPG 821
            : .||.:::...|::....|.|  |.|:||.|||::|.:::......||.:|..|.:|.|.:  .
Yeast   396 L-IDEVEAIASSRTNLSSRNESTDGIRVVNTLLTQLDRLKKYHNFLALATSNLLDSLDDAFV--D 457

  Fly   822 RLDTILYVGFPEQSERTEILK 842
            |.|.:.|||.|.......|||
Yeast   458 RADGVFYVGNPTAEGILHILK 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 95/476 (20%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 14/49 (29%)
AAA 699..830 CDD:278434 40/158 (25%)
PCH2NP_009745.2 SpoVK 1..487 CDD:223540 95/476 (20%)
P-loop_NTPase 248..465 CDD:422963 50/223 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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