DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and SEC18

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:425 Identity:128/425 - (30%)
Similarity:213/425 - (50%) Gaps:77/425 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   568 KKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEY---YEPTLAELTNFLDNPPEEFADPN 629
            |.|.::....::|:| ::.....|||....|......::   ||..:...|.:|   ..||....
Yeast   106 KYSGKQSYLGSIDID-ISFRARGKAVSTVFDQDELAKQFVRCYESQIFSPTQYL---IMEFQGHF 166

  Fly   630 FCLTLIDFVDAIKV--MQPSAK----------------------REGFITV-------------- 656
            |.|.:.: |.||.:  ::|::.                      |:|.:.:              
Yeast   167 FDLKIRN-VQAIDLGDIEPTSAVATGIETKGILTKQTQINFFKGRDGLVNLKSSNSLRPRSNAVI 230

  Fly   657 -PDTTWDD--IGALEK-IREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAI- 716
             ||..::|  :|.|:| ..:..:.|..:.:..|.::|:||::...|:||.||||.||||:|:.| 
Yeast   231 RPDFKFEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIG 295

  Fly   717 ----ANEAGINFISVKGPELMNMYVGESERAVRACFQ--------RARNSAPCVIFFDEFDSLCP 769
                |.|..|    |.|||:::.|||.||..:|..|:        :...|:..:|.|||.||:..
Yeast   296 TMLNAKEPKI----VNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFK 356

  Fly   770 KRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQ 834
            :|...|||...|..:|||||.:||||::...:.::..|||.|:||.|:|||||.:..:.:..|::
Yeast   357 QRGSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDE 421

  Fly   835 SERTEILKATTKN-GKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLN--NGDTN 896
            ..|.:|....||. .:..:::|||:|.|:||.|:.::||::.||||.||.|::.:::|  .|.|.
Yeast   422 KGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATK 486

  Fly   897 LD-----DLCVRSQHFQEALQQLRPS--VNEQDRK 924
            |:     .|.|..:.|..||..:.|:  ::|:|.|
Yeast   487 LNTKDIAKLKVTREDFLNALNDVTPAFGISEEDLK 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 128/425 (30%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012
CDC48_2 134..204 CDD:215011 13/73 (18%)
CDC48 <232..>629 CDD:273521 106/294 (36%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 68/179 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.