DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and RIX7

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_013066.1 Gene:RIX7 / 850625 SGDID:S000003957 Length:837 Species:Saccharomyces cerevisiae


Alignment Length:969 Identity:334/969 - (34%)
Similarity:491/969 - (50%) Gaps:251/969 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 AKPLLHDHLITI---------RVKK-YLEEHIGETYLDVKQMTRELMQKYPEYSRRKFGPFRQLV 58
            ||.|....:.|.         |||| .|::.|.....||.:...|....||.|:..:        
Yeast    65 AKDLTAGEIFTFCLTKDLSLQRVKKVVLQKTIDRMLKDVIESELEEFGSYPGYNNEE-------- 121

  Fly    59 HQAFSIISESYNLDKVSSSEEDCVSEDSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISEPIDISS 123
                   .|..:|::..:.:...:..|     ||. ||..:.|.:|:                 |
Yeast   122 -------EEKPSLEEELAKKNMMIERD-----TNE-MNKRITSTWSK-----------------S 156

  Fly   124 GDENEDDSNTKTTNGDGVAAAAAPPPPTPAVQGSALKRLMEEVPEIAVAAKKVAKPNTIHVSSSE 188
            |..:|  |.|:|.:           |.|            |||.:    :||.:|..|..|    
Yeast   157 GSVSE--SITETDD-----------PKT------------EEVKK----SKKRSKEGTCKV---- 188

  Fly   189 AIQKLHQVVGNRAKNLSEDAVPRSKDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDI 253
                       :.:.:.||..|                                   |..|.:.:
Yeast   189 -----------KRQKIKEDRSP-----------------------------------PNSSLKSL 207

  Fly   254 GGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPA 317
            ||||..:.:|.|:: :.|..||.:...|:.|.||:|||||||||||.:|.|::|:|::|.:.|.|
Yeast   208 GGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISA 272

  Fly   318 TELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQ-WASKDMERRIVSQLISSLDNL 381
            ..::.|:|||||::||::||:|...:||::|.||||||...|. .|.::||||||:||::|:|.|
Yeast   273 PSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDEL 337

  Fly   382 ---KANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKL 443
               |.|  |:.|::|.||.|||.||..|||.||||.||.:::|:...|..||:...:.|.:|..:
Yeast   338 TMEKTN--GKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAI 400

  Fly   444 NYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGET 508
            ::.|:|:||||:|||||.|||:.|.:.|:||     ..:.:|..:...||.|    :.|||    
Yeast   401 DFAKLAKLTPGFVGADLKALVTAAGTCAIKR-----IFQTYANIKSTPTTAT----DSSED---- 452

  Fly   509 PVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEK 573
                                                 |:|..:.|....||:|            
Yeast   453 -------------------------------------NMEIDETANGDESSLK------------ 468

  Fly   574 PTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLI--- 635
                  :..|:....|...|:|                     |:.|.||..:.....|..|   
Yeast   469 ------NTANMIDPLPLSVVQQ---------------------FIRNYPEPLSGEQLSLLSIKYE 506

  Fly   636 DFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVL 700
            ||:.|:..:||:||||||.||||.||.::|||:::|.||.:|::.|:|.||:.|::|::||.|||
Yeast   507 DFLKALPTIQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVL 571

  Fly   701 LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFD 765
            |.|||||||||||||:|||:..||||:|||||:|.|||||||::|..|.|||.|.||||||||.|
Yeast   572 LWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELD 636

  Fly   766 SLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVG 830
            :|.|:|..  ..:.|.:|:||.||||:||:.:|:|::::.||||||:||||:|||||||..|::.
Yeast   637 ALVPRRDT--SLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIE 699

  Fly   831 FPEQSERTEILKATTKNGKRPVLADDVDLDEIA--AQTEGYTGADLAGLVKQASMFSLRQSL--- 890
            .|...|:.:|:|..||:...| |:.|||.:||.  .:...::|||||.||:::|:.:|::..   
Yeast   700 LPNTEEKLDIIKTLTKSHGTP-LSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQS 763

  Fly   891 --------NNGDTNLDDL---------CVRSQHFQEALQQLRPSVNEQDRKIYDKLRLK 932
                    |:.|...:||         .|....|:.||::::|||:::||..||:|..|
Yeast   764 EEIQSVLDNDLDKEFEDLSVGVSGEEIIVTMSDFRSALRKIKPSVSDKDRLKYDRLNKK 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330 17/76 (22%)
SpoVK 271..919 CDD:223540 274/676 (41%)
AAA 287..418 CDD:278434 72/134 (54%)
P-loop_NTPase 679..>716 CDD:304359 24/36 (67%)
AAA 699..830 CDD:278434 84/130 (65%)
RIX7NP_013066.1 CDC48 <192..824 CDD:273521 293/760 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345833
Domainoid 1 1.000 179 1.000 Domainoid score I715
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1902
Inparanoid 1 1.050 506 1.000 Inparanoid score I205
Isobase 1 0.950 - 0 Normalized mean entropy S933
OMA 1 1.010 - - QHG53526
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102053
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1718
SonicParanoid 1 1.000 - - X2802
TreeFam 1 0.960 - -
1514.740

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