Protein Alignment smid and AT1G62130

DIOPT Version :10

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_176404.3
• Gene: AT1G62130 / 842509
• AraportID: AT1G62130
• Length: 1043
• Species: Arabidopsis thaliana
• Alignment Length: 961
• Identity: 203/961 - (21%)
• Similarity: 342/961 - (35%)
• Gaps: 325/961 - (33%)

  Fly    20 YLEEHIGETYLDVKQMTRELMQ-KYPEYSR---------RKFGPFRQLVHQAF--SIISESYNLD 72
            ||.||.....|.|..|....|. .|..|:.         ...||....::|..  ..::.|:|
plant   320 YLSEHTKYVLLAVSDMHLNKMNIGYAPYASDLTILNPRILLSGPAGSEIYQEILAKALANSFN-- 382

  Fly    73 KVSSSEEDCVSEDSEP---PPTNSVMNNMMNSLYSQPRKPLAPKPI--SEPIDISSGDENEDDSN 132
                  ...:..||.|   ..|.....::||          .|..|  .:.:|:|||
plant   383 ------AKLLIFDSNPILGVMTAKEFESLMN----------GPALIDRGKSLDLSSG-------- 423

  Fly   133 TKTTNGDGVAAAAAPPPPT-PAVQGSALKRLMEEVPEIAVAAKKVAKPNTIHVSSSEAIQKLHQV 196
                .||    ::.|.|.| |...|:.:..|:                 .:|...:        :
plant   424 ----QGD----SSIPSPATSPRSFGTPISGLL-----------------ILHWGKT--------L 455

  Fly   197 VGNRAKNLSEDAVPRSKDHRNVP-GLYQQL----HQNQSRDRLRKFKRDLEVQHPTESFRDIGGM 256
            .|:|.:...::..|.....|..| |...::    .:|.|.      |..:..::|.....|:|
plant   456 AGDRVRFFGDELCPGLPTSRGPPYGFIGKVLLVFDENPSA------KVGVRFENPVPDGVDLG-- 512

  Fly   257 DSTLKELCEMLIHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKM----PLMEIPA 317
                 :||||                             |..|...|...|.:.    .|.|:..
plant   513 -----QLCEM-----------------------------GHGFFCSATDLQFESSASDDLNELLV 543

  Fly   318 TELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIV--SQLISSLDN 380
            |:|.            ||........|.::|:              ||.|:..|  |...|:..:
plant   544 TKLF------------EVAHDQSRTCPVIIFL--------------KDAEKYFVGNSHFCSAFKS 582

  Fly   381 LKANEFGQSVVVIAATTRPDVLDPGLRRIGR----FDHEIAIHIPSRKERREILR-----IQCEG 436
             |......:::||.:.|..|  :|..:.|||    |.:::.|::|   :..|:|:     :..:.
plant   583 -KLEVISDNLIVICSQTHSD--NPKEKGIGRLTDLFVNKVTIYMP---QGEELLKSWKYHLDRDA 641

  Fly   437 LSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEP 501
            .::..|.||:.: .:..|..|.:.                            :.:.|:.:.|...
plant   642 ETLKMKANYNHL-RMVLGRCGIEC----------------------------EGIETLCMKDLTL 677

  Fly   502 SEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKT 566
            ..|:.|                   |:.|...:.....:.|..|::..
plant   678 RRDSAE-------------------KIIGWALSHHIKSNPGADPDVRV----------------- 706

  Fly   567 PKKSAEKPTDAAMDVDNVAPEEPKKAVE-QEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNF 630
                            .::.|..|..:| .|::|..|..:.......|:::.:  ||.|..
plant   707 ----------------ILSLESLKCGIELLEIESKKSLKDIVTENTFEISDII--PPSEIG---- 749

  Fly   631 CLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA 695
                                        .|:|||||||.:::.||..|:.|.::||:..:..||.
plant   750 ----------------------------VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTK 786

  Fly   696 P-SGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVI 759
            | :|:||.||.|.|||:||||:|.|||.|.|::.    |:.:..|.|:.|:|.|..|...:|.:|
plant   787 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMS----MSRWFSEGEKYVKAVFSLASKISPSII 847

  Fly   760 FFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV--EERKGVYILAATNRPDIIDPAILRPGR 822
            |.||.:|:.         :....:..|:.:...||:  .|::.|.:|||||||..:|.|::|  |
plant   848 FLDEVESML---------HRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVIR--R 901

  Fly   823 LDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLR 887
            |...|.||.|:...|::|||...   .:..|:.|.|:||:|:.|.||:|.||..|...|:...:.
plant   902 LPHRLMVGLPDARSRSKILKVIL---SKEDLSPDFDIDEVASMTNGYSGNDLKNLCVTAARRRII 963

  Fly   888 QSLNNGDTNLD----------------DLCV-RSQHFQEALQQLRPSVNEQ 921
            :.:....:..|                ||.| :.:.|:.||:.:..|::.:
plant   964 EIVEKEKSERDAAVAEGRVPPAGSGGSDLRVLKMEDFRNALELVSMSISSK 1014

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:465247	14/62 (23%)
		CDC48	<242..933	CDD:273521	158/716 (22%)
AT1G62130	NP_176404.3	FHA	93..193	CDD:469597
		RPT1	705..1016	CDD:440835	106/395 (27%)
		P-loop containing Nucleoside Triphosphate Hydrolases	754..908	CDD:476819	65/168 (39%)