Protein Alignment smid and RPT1A

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_175778.1
• Gene: RPT1A / 841812
• AraportID: AT1G53750
• Length: 426
• Species: Arabidopsis thaliana
• Alignment Length: 437
• Identity: 135/437 - (30%)
• Similarity: 202/437 - (46%)
• Gaps: 94/437 - (21%)

  Fly   488 EKNMTTVTLDDDE----PSEDAGETPVPDSKGEETAKD-AEAEQKVDGDKE--TSAKDKSEGD-- 543
            |||..  .||:|:    .:...|....|..|.|:..|| |:....:.|.||  |.....|:.|
plant    12 EKNPR--PLDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLAPPSQWDLV 74

  Fly   544 ---------------------SPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPE 587
                                 |||.|..|...|           .|:.|:......   |.|:|.
plant    75 SDKQMMQEEQPLQVARCTKIISPNTEDAKYVIN-----------VKQIAKFVVGLG---DKVSPT 125

  Fly   588 EPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREG 652
            :.::.:...||.:....:            :..||:  .||:..:..::
plant   126 DIEEGMRVGVDRNKYQIQ------------IPLPPK--IDPSVTMMTVE---------------- 160

  Fly   653 FITVPDTTWDDIGA----LEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLA 713
              ..||.|::|:|.    :||:||.::|    |:.:||...:||:..|.|||..||||.||||||
plant   161 --EKPDVTYNDVGGCKEQIEKMREVVEL----PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLA 219

  Fly   714 KAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKR-SDGGDG 777
            :|:||.....||.|.|.||:..||||..|.||..||.||:...|::||||.|::...| .||..|
plant   220 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284

  Fly   778 NNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILK 842
            :|...|.:.:::.::||.:.|..:.:|.||||||.:|||:|||||||..:..|.|:...||:|.|
plant   285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349

  Fly   843 ATTK--NGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLR 887
            ..|:  |.:|     |:..:.:|......||||:..:..:|.|:::|
plant   350 IHTRTMNCER-----DIRFELLARLCPNSTGADIRSVCTEAGMYAIR 391

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	135/437 (31%)
		AAA	287..418	CDD:278434
		P-loop_NTPase	679..>716	CDD:304359	19/36 (53%)
		AAA	699..830	CDD:278434	64/131 (49%)
RPT1A	NP_175778.1	RPT1	26..423	CDD:224143	129/421 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910