DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and KATNAL2

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001340828.1 Gene:KATNAL2 / 83473 HGNCID:25387 Length:564 Species:Homo sapiens


Alignment Length:450 Identity:120/450 - (26%)
Similarity:212/450 - (47%) Gaps:78/450 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   550 PK--KATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEP-------KKAVEQEVDSSSSNDE 605
            ||  |.::..:....||::..|:.....|:..::..:..:.|       |....:.::....|.|
Human   113 PKIVKKSSDTAENNLPQRSRGKTRRMMNDSCQNLPKINQQRPRSKTTAGKTGDTKSLNKEHPNQE 177

  Fly   606 YYEPTLAELTNF-------LDNPPEEFADPNFCLTLIDF----VDAIK----------------- 642
            ..:.|..|..||       ..:..||.|.|... .:|||    .||||                 
Human   178 VVDNTRLESANFGLHISRIRKDSGEENAHPRRG-QIIDFQGLLTDAIKGATSELALNTFDHNPDP 241

  Fly   643 ---VMQPSA----------------KREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEML 688
               :::|.:                .|:.::..|:..|:||..|:..::.:|.||:.|::||::.
Human   242 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLF 306

  Fly   689 ERLGLTAP-SGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRAR 752
              .|:.:| .|:||.||||.||||||||:|.|....|.::....:::.:.|:||:.||..|:.||
Human   307 --TGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELAR 369

  Fly   753 NSAPCVIFFDEFDSLCPKRSDGGDGNNSGT-RIVNQLLTEMDGVEERKG-VYILAATNRPDIIDP 815
            ..||..||.||.:|:..:|.....|.:.|: |:..:||.:|||:...:. |::|||:|.|..:|.
Human   370 YHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDC 434

  Fly   816 AILRPGRLDTILYVGFPEQSERTEI----LKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAG 876
            |:||  ||:..:.|..|.:..|..:    |...:|: :...|..:::...::.:||||:|:|:..
Human   435 AMLR--RLEKRILVDLPSREARQAMIYHWLPPVSKS-RALELHTELEYSVLSQETEGYSGSDIKL 496

  Fly   877 LVKQASMFSLRQ---SLNNGDTNLDDL------CVRSQHFQEALQQLRPSVNEQDRKIYD 927
            :.::|:|..:|:   :|.|..:...||      .|.:..|.:.|...:||.....::..|
Human   497 VCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLTHTKPSAKNLAQRYSD 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 119/449 (27%)
KATNAL2NP_001340828.1 LisH 51..81 CDD:128913
RPT1 212..548 CDD:440835 100/340 (29%)
RecA-like_VPS4-like 282..446 CDD:410917 64/167 (38%)
Blue background indicates that the domain is not in the aligned region.

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