Sequence 1: | NP_523959.2 | Gene: | smid / 38824 | FlyBaseID: | FBgn0016983 | Length: | 944 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_568114.1 | Gene: | AtCDC48C / 831870 | AraportID: | AT5G03340 | Length: | 810 | Species: | Arabidopsis thaliana |
Alignment Length: | 708 | Identity: | 238/708 - (33%) |
---|---|---|---|
Similarity: | 369/708 - (52%) | Gaps: | 161/708 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 238 KRDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLA 301
Fly 302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
Fly 367 ERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR 431
Fly 432 IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTL 496
Fly 497 DDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIK 561
Fly 562 SPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFA 626
Fly 627 DPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
Fly 692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAP 756
Fly 757 CVIFFDEFDSLCPKR-SDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRP 820
Fly 821 GRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFS 885
Fly 886 LRQSLNNGDTN---------------LDDLC--VRSQHFQEALQQLRPSVNEQDRKIY 926 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
smid | NP_523959.2 | Nucleolin_bd | 2..71 | CDD:293330 | |
SpoVK | 271..919 | CDD:223540 | 228/665 (34%) | ||
AAA | 287..418 | CDD:278434 | 58/130 (45%) | ||
P-loop_NTPase | 679..>716 | CDD:304359 | 21/36 (58%) | ||
AAA | 699..830 | CDD:278434 | 84/131 (64%) | ||
AtCDC48C | NP_568114.1 | CDC48 | 29..768 | CDD:273521 | 238/708 (34%) |
CDC48_N | 29..111 | CDD:280513 |