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Protein Alignment smid and AtCDC48C

DIOPT Version :9

Sequence 1:	NP_523959.2	Gene:	smid / 38824	FlyBaseID:	FBgn0016983	Length:	944	Species:	Drosophila melanogaster
Sequence 2:	NP_568114.1	Gene:	AtCDC48C / 831870	AraportID:	AT5G03340	Length:	810	Species:	Arabidopsis thaliana

Alignment Length:	708	Identity:	238/708 - (33%)
Similarity:	369/708 - (52%)	Gaps:	161/708 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   238 KRDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLA 301
            ||:.|.:.....:.|:||:...:.::.|:: :.::.|:.:..:|:.|.:|:||:||||.|||.:|
plant   194 KREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

  Fly   302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
            ||::.:.......|...|::..::||||..:|:.|::|...:|.::||||||:|...|:..:.::
plant   259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 323

  Fly   367 ERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR 431
            ||||||||::.:|.||:.   ..|:|:.||.||:.:||.|||.||||.||.|.:|....|.|:||
plant   324 ERRIVSQLLTLMDGLKSR---AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLR 385

  Fly   432 IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTL 496
            |..:.:.:...::.::|::.|.|||||||.||.:.||...::.:               |..:.|
plant   386 IHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREK---------------MDVIDL 435

  Fly   497 DDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIK 561
            :||                   :.|||.
plant   436 EDD-------------------SIDAEI------------------------------------- 444

  Fly   562 SPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFA 626
                                               ::|.:.::|::...|..
plant   445 -----------------------------------LNSMAVSNEHFHTALGN------------- 461

  Fly   627 DPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
                             ..|||.||..:.||:.:|:|||.||.::.||:..|..||::||..|:.
plant   462 -----------------SNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKF 509

  Fly   692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAP 756
            |::...|||..|||||||||||||||||...||||||||||:.|:.||||..||..|.:||.|||
plant   510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP 574

  Fly   757 CVIFFDEFDSLCPKR-SDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRP 820
            ||:||||.||:..:| :..||...:..|::|||||||||:..:|.|:|:.|||||||||.|:|||
plant   575 CVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRP 639

  Fly   821 GRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFS 885
            ||||.::|:..|::..|..|.||..:  |.|| |.|||:..:|..|:|::|||:..:.::|..::
plant   640 GRLDQLIYIPLPDEDSRLNIFKACLR--KSPV-AKDVDVTALAKYTQGFSGADITEICQRACKYA 701

  Fly   886 LRQSLNNGDTN---------------LDDLC--VRSQHFQEALQQLRPSVNEQDRKIY 926
            :|:::.....|               :||..  :|:.||:|:::..|.||::.|.:.|
plant   702 IRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKY 759

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.