DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment smid and AT3G28510

DIOPT Version :9

Sequence 1:	NP_523959.2	Gene:	smid / 38824	FlyBaseID:	FBgn0016983	Length:	944	Species:	Drosophila melanogaster
Sequence 2:	NP_189492.1	Gene:	AT3G28510 / 822481	AraportID:	AT3G28510	Length:	530	Species:	Arabidopsis thaliana

Alignment Length:	391	Identity:	90/391 - (23%)
Similarity:	160/391 - (40%)	Gaps:	88/391 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   203 NLSEDAVP-RSKDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKE--LC 264
            |.|::..| ||....|||                       ..||. :|..: .||...||  ..
plant   184 NSSQEWYPWRSGKWSNVP-----------------------FHHPA-TFETL-AMDPEKKEGIKK 223

  Fly   265 EMLIHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESE 329
            :::...|..::|.::|....||.||.||||.||:.:..||:..|...:.::..|.:     .::.
plant   224 DLIKFSKGKDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIANFLDYDVYDLELTTV-----KDNS 283

  Fly   330 ERIREVFDQAIGYSPCVLFIDEIDA---IGGNRQWASKDMERR---------------------I 370
            |..:.:.|..   |..::.|::||.   :.|.|:...::.|..                     .
plant   284 ELKKLLLDTT---SKSIIVIEDIDCSLDLTGQRKKKKEEDEEEDGEEKKEGEKKPKVDDKQSKVT 345

  Fly   371 VSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCE 435
            :|.|::|:|.|.:...|:.::|. .|...|.|||.|.|.||.|:    ||.....:.|..::..:
plant   346 LSGLLNSIDGLWSACSGEKIIVF-TTNFVDKLDPALIRRGRMDN----HIEMSYCKFEAFKVLAK 405

  Fly   436 G-LSVDPKLNYDKI------AELTPGYVGADLMALVSRA-ASVAVKRRSMKKFRELHAASEKNMT 492
            . |.::....|.:|      .:::|..|...||...... |.:.:| |.:|...|....:.|
plant   406 NYLEIETHDLYGEIERKLEETDMSPADVAETLMPKSDEEDADICIK-RLVKTLEEEKEKARK--- 466

  Fly   493 TVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGN 557
               |.::|..:.|.:    ::|..:.|::||.::|...:.|...|.|::.::.|:    ...|||
plant   467 ---LAEEEEKKKAEK----EAKKMKKAEEAEEKKKKTEEDEKKEKVKAKEENGNV----SQQNGN 520

  Fly   558 S 558
            |
plant   521 S 521

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	75/320 (23%)
		AAA	287..418	CDD:278434	38/154 (25%)
		P-loop_NTPase	679..>716	CDD:304359
		AAA	699..830	CDD:278434
AT3G28510	NP_189492.1	AAA_assoc	29..124	CDD:291061
		AAA	243..392	CDD:214640	42/161 (26%)
		AAA	246..394	CDD:278434	40/160 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910