DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and CDC48C

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001326134.1 Gene:CDC48C / 821105 AraportID:AT3G01610 Length:830 Species:Arabidopsis thaliana


Alignment Length:935 Identity:312/935 - (33%)
Similarity:451/935 - (48%) Gaps:228/935 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 RRKFGPFRQLVHQAFSI----ISESYNLDKVSSSEED--------CVSEDSEPPPTNSVMNNMMN 100
            |.::|.|.:|..|...:    :....|..:|...:||        ..|:..:....:.....:..
plant    43 RSRYGNFARLTRQVLLLNVRQVLNVRNNKRVKDEDEDDNIGDEEGSASQRKKQRRVDEKEEKLQR 107

  Fly   101 SLYSQPRKPLAPKPISEPIDISSGDENEDDSNTKTTNGDGVAAAAAPPPPTPAVQGSALKRLMEE 165
            :..|..||....:.:|.....||..|   ||...:|:.|.|......||....:..|    |.:.
plant   108 AEQSHLRKRNMERSVSSSPSSSSSSE---DSGDVSTSEDAVYGEKLSPPRFDLINDS----LRDN 165

  Fly   166 VPEIAVAAKKVAKPNTIHVSSSEAIQKLHQVVGNRA-KNLSEDAVPRSKDHRNVPGLYQQLHQNQ 229
            ..::..::||                    .:|:.| ||:..:.|                 .|:
plant   166 YAKLNSSSKK--------------------PIGSPAEKNVEVETV-----------------SNK 193

  Fly   230 SRDRL-----RKFKR------------DLEVQ---HPTESFRDIGGMDSTLKEL-CEMLIHIKSP 273
            .|.:|     ||..:            ||||:   .||  |:|.||:...|.|| ..:|..|.:|
plant   194 GRSKLATMGARKEAKVSLSLSGATGNGDLEVEGTKGPT--FKDFGGIKKILDELEMNVLFPILNP 256

  Fly   274 EFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQ 338
            |.:.::|:.|..|:|.|||||||||.||.||:.:..:|..:|.|||:|.|:||.|||.|||:|.:
plant   257 EPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSK 321

  Fly   339 AIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLD--------NLKANEFGQSVVVIAA 395
            |...:|.::|||||||||..|:...::||:|||:||::.:|        |...:..| .|:||.|
plant   322 AYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAG-FVLVIGA 385

  Fly   396 TTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADL 460
            |.|||.|||.|||.|||:.|||:..|....|.|||.:..:.|.::...:..:||.||||:|||||
plant   386 TNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADL 450

  Fly   461 MALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAE 525
            .::...|...|:||                                   :.||:        ::|
plant   451 ESVAYLAGRKAIKR-----------------------------------ILDSR--------KSE 472

  Fly   526 QKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPK 590
            |..||:     .|||                                                  
plant   473 QSGDGE-----DDKS-------------------------------------------------- 482

  Fly   591 KAVEQEVDSSSSNDEYYEPTLAELTNFLDNP-PEEFADPNFCLTLIDFVDAIKVMQPSAKREGFI 654
                                      :|..| |||..:..| :.:.||.:|:.::|.|..||||.
plant   483 --------------------------WLRMPWPEEELEKLF-VKMSDFEEAVNLVQASLTREGFS 520

  Fly   655 TVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANE 719
            .|||..|||:|.|:.:|.:....::.|:|.|::.:..|:...:|.||.|||||||||:|||.|||
plant   521 IVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANE 585

  Fly   720 AGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRI 784
            ||.||:.:||.||:|.||||||.|:|..|||||..|||||||||.|:|...|  |.:|.....|:
plant   586 AGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSR--GKEGAWVVERL 648

  Fly   785 VNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGK 849
            :||.|.|:|| .||:.||::.||||||::|||.|||||...:|||..|...||..||||..:  |
plant   649 LNQFLVELDG-GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIAR--K 710

  Fly   850 RPVLADDVDLDEIAAQT-EGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDL-----C-VRSQHF 907
            :|: ...||||.||... ||::|||||.||::|:..::.:.:.:.:::.||:     | ::::||
plant   711 KPI-DPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHF 774

  Fly   908 QEALQQLRPSVNEQDRKIYDKLRLK 932
            ::||..:.||||:|.|:.||.|..|
plant   775 EQALSLVSPSVNKQQRRHYDALSTK 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330 5/26 (19%)
SpoVK 271..919 CDD:223540 251/663 (38%)
AAA 287..418 CDD:278434 71/138 (51%)
P-loop_NTPase 679..>716 CDD:304359 18/36 (50%)
AAA 699..830 CDD:278434 80/130 (62%)
CDC48CNP_001326134.1 CDC48 <223..808 CDD:273521 272/711 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 137 1.000 Domainoid score I1588
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1902
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53526
OrthoDB 1 1.010 - - D194195at2759
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102053
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2802
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.790

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