DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and CDC48

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_187595.1 Gene:CDC48 / 820142 AraportID:AT3G09840 Length:809 Species:Arabidopsis thaliana


Alignment Length:708 Identity:236/708 - (33%)
Similarity:370/708 - (52%) Gaps:161/708 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 KRDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLA 301
            ||:.|.:.....:.|:||:...:.::.|:: :.::.|:.:..:|:.|.:|:||:||||.|||.:|
plant   194 KREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

  Fly   302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
            ||::.:.......|...|::..::||||..:|:.|::|...:|.::||||||:|...|:..:.::
plant   259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 323

  Fly   367 ERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR 431
            ||||||||::.:|.||:.   ..|:|:.||.||:.:||.|||.||||.||.|.:|....|.|:||
plant   324 ERRIVSQLLTLMDGLKSR---AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLR 385

  Fly   432 IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTL 496
            |..:.:.:...::.::|::.|.|||||||.||.:.||...::.:               |..:.|
plant   386 IHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREK---------------MDVIDL 435

  Fly   497 DDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIK 561
            :||                   :.|||.                                     
plant   436 EDD-------------------SIDAEI------------------------------------- 444

  Fly   562 SPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFA 626
                                               ::|.:..:|::...|..             
plant   445 -----------------------------------LNSMAVTNEHFHTALGN------------- 461

  Fly   627 DPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
                             ..|||.||..:.||:.:|:|||.||.::.||:..|..||::||..|:.
plant   462 -----------------SNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKF 509

  Fly   692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAP 756
            |::...|||..|||||||||||||||||...||||||||||:.|:.||||..||..|.:||.|||
plant   510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP 574

  Fly   757 CVIFFDEFDSLCPKR--SDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILR 819
            ||:||||.||:..:|  ..||||..:..|::|||||||||:..:|.|:|:.|||||||||.|:||
plant   575 CVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLR 639

  Fly   820 PGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMF 884
            |||||.::|:..|::..|..|.||..:  |.|: |.|||:..:|..|:|::|||:..:.::|..:
plant   640 PGRLDQLIYIPLPDEDSRLNIFKAALR--KSPI-AKDVDIGALAKYTQGFSGADITEICQRACKY 701

  Fly   885 SLRQSLNNG---------------DTNLDDLC-VRSQHFQEALQQLRPSVNEQDRKIY 926
            ::|:::...               :..:|::. :::.||:|:::..|.||::.|.:.|
plant   702 AIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKY 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 234/704 (33%)
CDC48NP_187595.1 CDC48 29..768 CDD:273521 236/708 (33%)
Blue background indicates that the domain is not in the aligned region.

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