DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and CDC48

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_187595.1 Gene:CDC48 / 820142 AraportID:AT3G09840 Length:809 Species:Arabidopsis thaliana


Alignment Length:708 Identity:236/708 - (33%)
Similarity:370/708 - (52%) Gaps:161/708 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 KRDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLA 301
            ||:.|.:.....:.|:||:...:.::.|:: :.::.|:.:..:|:.|.:|:||:||||.|||.:|
plant   194 KREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258

  Fly   302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
            ||::.:.......|...|::..::||||..:|:.|::|...:|.::||||||:|...|:..:.::
plant   259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 323

  Fly   367 ERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR 431
            ||||||||::.:|.||:.   ..|:|:.||.||:.:||.|||.||||.||.|.:|....|.|:||
plant   324 ERRIVSQLLTLMDGLKSR---AHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLR 385

  Fly   432 IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTL 496
            |..:.:.:...::.::|::.|.|||||||.||.:.||...::.:               |..:.|
plant   386 IHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREK---------------MDVIDL 435

  Fly   497 DDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIK 561
            :||                   :.|||.                                     
plant   436 EDD-------------------SIDAEI------------------------------------- 444

  Fly   562 SPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFA 626
                                               ::|.:..:|::...|..             
plant   445 -----------------------------------LNSMAVTNEHFHTALGN------------- 461

  Fly   627 DPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
                             ..|||.||..:.||:.:|:|||.||.::.||:..|..||::||..|:.
plant   462 -----------------SNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKF 509

  Fly   692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAP 756
            |::...|||..|||||||||||||||||...||||||||||:.|:.||||..||..|.:||.|||
plant   510 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP 574

  Fly   757 CVIFFDEFDSLCPKR--SDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILR 819
            ||:||||.||:..:|  ..||||..:..|::|||||||||:..:|.|:|:.|||||||||.|:||
plant   575 CVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLR 639

  Fly   820 PGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMF 884
            |||||.::|:..|::..|..|.||..:  |.|: |.|||:..:|..|:|::|||:..:.::|..:
plant   640 PGRLDQLIYIPLPDEDSRLNIFKAALR--KSPI-AKDVDIGALAKYTQGFSGADITEICQRACKY 701

  Fly   885 SLRQSLNNG---------------DTNLDDLC-VRSQHFQEALQQLRPSVNEQDRKIY 926
            ::|:::...               :..:|::. :::.||:|:::..|.||::.|.:.|
plant   702 AIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKY 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 226/665 (34%)
AAA 287..418 CDD:278434 58/130 (45%)
P-loop_NTPase 679..>716 CDD:304359 21/36 (58%)
AAA 699..830 CDD:278434 86/132 (65%)
CDC48NP_187595.1 CDC48 29..768 CDD:273521 236/708 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D194195at2759
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.