DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and yme1l1a

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_005162918.1 Gene:yme1l1a / 793098 ZFINID:ZDB-GENE-091113-41 Length:729 Species:Danio rerio


Alignment Length:375 Identity:115/375 - (30%)
Similarity:172/375 - (45%) Gaps:66/375 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   557 NSSIKSPQKTP--KKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLD 619
            |...|:..|:.  :.|:|.|.:|    ||..|...|..:.:|...:.|.::..:.         :
Zfish   155 NRGFKTMSKSRHLRSSSEGPVEA----DNYTPVFMKGLMMKEKTDTGSLEQLLKQ---------N 206

  Fly   620 NPPEEFAD---PNFCLTLIDFVDAIKVMQPSAKREGFI----------------------TVPDT 659
            |.||...|   ..|....:......|..|.|.||...|                      :..||
Zfish   207 NLPESHQDAFKTGFTEGFMKAQALTKRTQDSVKRTRLIIFVLLLAGIYGVSRSPFFSGKGSFSDT 271

  Fly   660 ---------------------TWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCG 703
                                 |::.:..:|:.:.||: .|:..::.|:....||...|.|:||.|
Zfish   272 VRFRTTSGLDSSVDPVQMKNITFEHVKGVEEAKNELQ-DVVEFLRNPQKFTVLGGKLPKGILLVG 335

  Fly   704 PPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLC 768
            |||.||||||:|:|.||.:.|....|.|...|:||.....:|..|:.|:.|||||||.||.||:.
Zfish   336 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFKEAKASAPCVIFIDELDSVG 400

  Fly   769 PKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPE 833
            .||.: ...:....:.:||||.||||.:..:||.::.|||..:.:|.|::||||.|..:.|..|:
Zfish   401 GKRIE-SPMHPYSRQTINQLLAEMDGFKPNEGVIVIGATNFAEALDNALVRPGRFDMQVTVPIPD 464

  Fly   834 QSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASM 883
            ...|||||:...|..|   :...:|.:.||..|.|::||:|..||.||::
Zfish   465 VKGRTEILEWYLKKIK---VDSAIDAEIIARGTVGFSGAELENLVNQAAL 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 115/375 (31%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 17/36 (47%)
AAA 699..830 CDD:278434 58/130 (45%)
yme1l1aXP_005162918.1 P-loop_NTPase 287..>351 CDD:304359 24/64 (38%)
FtsH_fam 289..722 CDD:273520 89/228 (39%)
AAA 331..461 CDD:278434 58/130 (45%)
Peptidase_M41 542..720 CDD:279742
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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