DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and pex6

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_001332652.5 Gene:pex6 / 792998 ZFINID:ZDB-GENE-081104-252 Length:1071 Species:Danio rerio


Alignment Length:697 Identity:206/697 - (29%)
Similarity:320/697 - (45%) Gaps:175/697 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 GMDSTLKELCEMLIHIKSPEFYFQLGLLPSRG--LLLHGPPGCGKTFLARAISGQLKMPLMEIPA 317
            |:.||:    |.||.|..|... :..|:..||  :||.||.|.||....||:|.:|.:.|:::..
Zfish   533 GLSSTV----EKLITIIQPHLN-ESTLILKRGCSILLMGPNGSGKFTAVRAVSRRLHLHLIKVDC 592

  Fly   318 TELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVS---QLISSLD 379
            ..|....:..||.:|:.||::|..:.||:|.:..:..:|.:|..|..|.  |:.:   |||:::.
Zfish   593 VTLCADTAAASEAKIKSVFERAELHHPCLLLLRNLQLLGQSRDGAETDC--RVAATLCQLIAAVH 655

  Fly   380 NLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLN 444
            .        ||||:.:.:....|...:  :..|.|::||...|..:||.:|....|.|.:...:|
Zfish   656 T--------SVVVVGSVSSQHELPSDV--MAAFVHQVAIESLSEDQRRMVLSSLSEDLLLGKDVN 710

  Fly   445 YDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETP 509
            ..:||:.|.|:|..||.||::.|...|.:|                              ..||.
Zfish   711 LGRIAKQTAGFVLGDLCALLTNAGKAAHRR------------------------------LVETY 745

  Fly   510 VPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKP 574
            .|::..|:..:|                                                     
Zfish   746 FPEAVSEQEEED----------------------------------------------------- 757

  Fly   575 TDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVD 639
                :.|..|:                                              :|..||..
Zfish   758 ----LCVSGVS----------------------------------------------VTSEDFSA 772

  Fly   640 AIKVMQPS-AKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCG 703
            |:.|:|.: ::..|...:|..:|.|:|.|:::::|:...:..|:::||:|. |||.. ||:||.|
Zfish   773 ALDVLQEAHSQAIGAPKIPAVSWQDVGGLQQVKKEILDTIQLPLEHPELLS-LGLRR-SGLLLYG 835

  Fly   704 PPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLC 768
            |||.||||||||:|.|..:.|:|||||||:|||||:||..:|....:||::|||:|||||.|||.
Zfish   836 PPGTGKTLLAKAVATECTMTFLSVKGPELINMYVGQSEENIRQVSSKARSAAPCIIFFDELDSLA 900

  Fly   769 PKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPE 833
            |.|...||......|:|:|||.|:||:.....|:::.||||||::|.::|||||.|.::|||..|
Zfish   901 PNRGHSGDSGGVMDRVVSQLLAELDGLHSSGDVFVIGATNRPDLLDQSLLRPGRFDKLVYVGINE 965

  Fly   834 QSE-RTEILKATTKNGKRPVLADDVDL-----DEIAAQTEGYTGADLAGLVKQASMFSLRQSLN- 891
            ..| :.::|||..:..|       ||.     |.:.:.....|||||..|...|.|.::::.:: 
Zfish   966 DRESQLQVLKAILRKFK-------VDASVCLSDIVESCPPRLTGADLYSLCSDAMMCAVKRKISR 1023

  Fly   892 ---NGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYAA 935
               ..|:.|..|.:.|:.|.|||..|:|||:||....|..|:.|.::
Zfish  1024 ITEGVDSELSSLTLCSEDFSEALSGLQPSVSEQQISRYQLLQQKLSS 1070

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 193/663 (29%)
AAA 287..418 CDD:278434 37/133 (28%)
P-loop_NTPase 679..>716 CDD:304359 22/36 (61%)
AAA 699..830 CDD:278434 72/130 (55%)
pex6XP_001332652.5 SpoVK 561..1060 CDD:223540 192/652 (29%)
P-loop_NTPase 562..>620 CDD:304359 19/57 (33%)
AAA 834..962 CDD:278434 70/127 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.