DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and Pex1

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001280735.1 Gene:Pex1 / 71382 MGIID:1918632 Length:1284 Species:Mus musculus


Alignment Length:889 Identity:234/889 - (26%)
Similarity:366/889 - (41%) Gaps:252/889 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 SLYSQPRKPLAPKPISEPIDISSGDENEDDSNTKTTNGDGVAAAAAPPPPTPAVQGSALK-RLME 164
            ||..|||:.| ||.::|             ...||.....|..:|....|....:...:| .:.:
Mouse   443 SLKLQPRENL-PKDVNE-------------ETIKTVFSSWVQQSATTMLPLVISKEERIKLEIKD 493

  Fly   165 EVPEIAVAA-----KKVAKPNTIHVSSSEAIQKLH-QVVGNRAKNLSEDAVPRSKDHRNVPGLYQ 223
            .:.|.:::.     |:..:..|:.|.||..:||:. ||:                       |..
Mouse   494 GLREFSLSTVHSQEKEKEEGKTVFVLSSILLQKISVQVL-----------------------LEP 535

  Fly   224 QLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHI-----KSPEFYFQLGLLP 283
            .:.:.||        .:::...|:.:...:||:.:......|.:.|.     .|.:....:..|.
Mouse   536 MIKEEQS--------AEIDFLLPSLTLSSLGGVSALGASAMEHITHSLLGRPLSRQLMALVAGLR 592

  Fly   284 SRGLLLHGPPGCGKTFLARAISGQLKMPL---MEIPATELIGGISGESEERIREV-FDQAIGYSP 344
            :..||:.|..|.||:..|:||..:.:..|   :|....:.:.|...||.::..|| |.:|....|
Mouse   593 NGALLITGGKGSGKSTFAKAICKEAQDTLDARVETVDCKALRGKRLESIQKALEVAFSEAAWRQP 657

  Fly   345 CVLFIDEIDAIGGNRQWASKDMERRIV-SQLISSLDNLKANEF---GQSVVVIAATTRPDVLDPG 405
            .|:.:|::|.|.|......::.....| ||.::...|....||   |..|.:||.:.....|.|.
Mouse   658 SVILLDDLDLIAGLPSVPEQEHSPEAVQSQRLAHALNDMIKEFVSTGSLVALIATSQLQQSLHPS 722

  Fly   406 L---RRIGRFDHEIAIHIPSRKERREIL------RIQCEGLSVDPKLNYDKIAELTPGYVGADLM 461
            |   :.|..|.....:..|:.::|.|||      ::.|: :|..|.|:...||:.|..:|..|..
Mouse   723 LVSAQGIHTFQCVQHLQPPNPEQRCEILHSVVKNKLGCD-ISNFPDLDLQCIAKDTEAFVARDFT 786

  Fly   462 ALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQ 526
            .||.||...::.|:        |::|.:::|                                  
Mouse   787 VLVDRAIHSSLSRQ--------HSSSREDLT---------------------------------- 809

  Fly   527 KVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKK 591
                                                                             
Mouse   810 ----------------------------------------------------------------- 809

  Fly   592 AVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITV 656
                                                    ||..||..|::...|::.|...:..
Mouse   810 ----------------------------------------LTTSDFQKALRGFLPASLRNVNLHK 834

  Fly   657 P-DTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEA 720
            | |..||.||.|.::|:.|...:..|.||||:...|.:...:|:||.||||.||||||..:|.|:
Mouse   835 PRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARES 899

  Fly   721 GINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIV 785
            |:||||:|||||::.|:|.||:|||..|.||:.:.||::|||||:|:.|:|  |.|......|:|
Mouse   900 GMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRR--GHDNTGVTDRVV 962

  Fly   786 NQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKR 850
            |||||::||||..:|||:||||:|||:||||:|||||||..:|...|:|..|.|||...:|:   
Mouse   963 NQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKS--- 1024

  Fly   851 PVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSL------NNGDTNLDDLCVRSQHF-- 907
            ..|||||||..:|:.|:.:|||||..|:..|.:.:|:..|      :.|.::..||.:.|..|  
Mouse  1025 LALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQGRLLPSGLPDGGSSSDSDLSLSSMVFLN 1089

  Fly   908 ----------------QEALQQLRPSVNEQDRKIYDKLRLKYAA 935
                            :::|..|..|....|...::..||.:.:
Mouse  1090 HSSGSDDSAGDGECGLEQSLLSLEMSEILPDESKFNMYRLYFGS 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 198/689 (29%)
AAA 287..418 CDD:278434 39/141 (28%)
P-loop_NTPase 679..>716 CDD:304359 19/36 (53%)
AAA 699..830 CDD:278434 79/130 (61%)
Pex1NP_001280735.1 PEX-2N 19..98 CDD:286362
PEX-1N 104..179 CDD:286361
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 339..373
AAA 592..742 CDD:214640 39/149 (26%)
AAA 596..725 CDD:278434 37/128 (29%)
AAA 878..1010 CDD:214640 79/133 (59%)
AAA 878..1007 CDD:278434 79/130 (61%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1261..1284
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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