DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Fignl2

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001201840.1 Gene:Fignl2 / 668225 MGIID:3646919 Length:644 Species:Mus musculus


Alignment Length:410 Identity:110/410 - (26%)
Similarity:155/410 - (37%) Gaps:69/410 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   501 PSEDAGETPVPDSKGEETAK---DAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKS 562
            ||..|..||:|.......|.   .|.||       ..|.|.|:..:.......|.|       ..
Mouse   229 PSGLAAPTPLPAPAPPRPAPYGFPAAAE-------GVSLKRKAVDEGAEARYRKYA-------YE 279

  Fly   563 PQKTP-KKSAEKPTDAAMDVD---NVAPEEPKKAVEQEVDSSSS-------NDEYYEPTLAELTN 616
            |.|.| ...|..|  ||.|.:   |....:|..|.|........       ....|.|.|.....
Mouse   280 PAKAPAADGASYP--AADDTECRGNGFRSKPPGATEDGTGKYGGGGPLKVLGSPAYAPQLEPFDK 342

  Fly   617 FLDNPPEE---FADPNFCLTLIDFVDAIKVMQPSA----KREGFITVPDTTWDDI---GALE-KI 670
            |.:..|..   ||:|:        .:..|.:.|.|    ..:.....|...|.|:   |||: .:
Mouse   343 FPERVPAAHGGFAEPS--------GEPAKGVDPGALELVSSKMVDCGPPVQWADVAGQGALKAAL 399

  Fly   671 REELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNM 735
            .|||...:|.|...|.     ....|..||..||.||||.||.:.:|...|...:.::|..|...
Mouse   400 EEELLWPLLRPPACPG-----SALPPRTVLFFGPRGCGKALLGRCLATRLGATLLRLRGAGLAAS 459

  Fly   736 YVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV--EER 798
            ...|..|.::|.|..||...|.|:...|.|:|.|.|.||..       :...|||.:||.  ...
Mouse   460 GAVEGARLLQAAFAAARCRPPAVLLISELDALLPARDDGAS-------LRAPLLTCLDGSCGARA 517

  Fly   799 KGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEIL-KATTKNGKRPVLADDVDLDEI 862
            .||.::..|:||..:|.|..|  |.....||..|:.:.|.:|| :|..:.|   ...::.:|..:
Mouse   518 DGVLVVGTTSRPAALDEATRR--RFALRFYVALPDGAARGQILQRALAQQG---CALNERELAAL 577

  Fly   863 AAQTEGYTGADLAGLVKQAS 882
            ...|:|::|.:|..|.:||:
Mouse   578 VQGTQGFSGGELGQLCQQAA 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 110/410 (27%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 14/36 (39%)
AAA 699..830 CDD:278434 44/132 (33%)
Fignl2NP_001201840.1 SpoVK <381..638 CDD:223540 72/234 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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