DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and Fign

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_068362.1 Gene:Fign / 60344 MGIID:1890647 Length:759 Species:Mus musculus


Alignment Length:482 Identity:115/482 - (23%)
Similarity:206/482 - (42%) Gaps:93/482 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   506 GETPV-PDSKGEETAKDAEAE---QKVDGDKETSAKDKSEGDSPNIETP---------KKATNGN 557
            |.||: |.:....:|...:.:   ....||.::|..:.|.|...:.::|         ..:..||
Mouse   299 GLTPIAPSALTNNSASSLKRKAFYMAGQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNSNRGN 363

  Fly   558 SSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVD------------------SSSSND 604
            ...::.:.:  ..|.|||...|      |.|.::....:..                  ||.|..
Mouse   364 GFDRNAETS--SLAFKPTKQLM------PSEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFG 420

  Fly   605 EYYEPTLAE--------LTNFLDNPPEEFAD----------PNFCLTLIDFVDAIKVMQPSAKRE 651
            :|..|.::|        |.:.:..|....|.          .|....|||.|....:.|.     
Mouse   421 KYTSPVMSEHGDDHRQLLAHPIQGPGLRAATSSNHSVDEQLKNTDTHLIDLVTNEIITQG----- 480

  Fly   652 GFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA-PSGVLLCGPPGCGKTLLAKA 715
                 |...|.||..|:.::..:|..||.||...:...  |||| |..:||.||.|.|||||.:.
Mouse   481 -----PPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTALPRSILLFGPRGTGKTLLGRC 538

  Fly   716 IANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNS 780
            ||::.|..|..:.|..|:..::||:|:.:.|.|..||...|.|||..:.|.|.  .|...:.::.
Mouse   539 IASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLL--SSQVSEEHSP 601

  Fly   781 GTRIVNQLLTEMDGV----EERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEIL 841
            .:|:..:.|.::|.|    |::  :.::.||::|:.||.::.|  .....|.:..|:.:.|.:|:
Mouse   602 VSRMRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII 662

  Fly   842 -KATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLC---- 901
             :..|::.   ...:|.:...:..:|||::|.|:|.|.::|::..|...   ..|:|..:.    
Mouse   663 VQLLTQHN---YCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAM---PATDLSAIMPSQL 721

  Fly   902 --VRSQHFQEALQQLRPSVNEQDRKIY 926
              |..|.|:.|..:::||:::::..:|
Mouse   722 RPVTYQDFENAFCKIQPSISQKELDMY 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 114/473 (24%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 18/37 (49%)
AAA 699..830 CDD:278434 42/134 (31%)
FignNP_068362.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..111
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 200..237
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..293
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 337..429 17/99 (17%)
26Sp45 389..736 CDD:130309 92/370 (25%)
AAA 522..652 CDD:278434 42/135 (31%)
Vps4_C <723..756 CDD:286426 7/26 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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