DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and AgaP_AGAP009548

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_001688268.1 Gene:AgaP_AGAP009548 / 5668090 VectorBaseID:AGAP009548 Length:617 Species:Anopheles gambiae


Alignment Length:550 Identity:148/550 - (26%)
Similarity:226/550 - (41%) Gaps:183/550 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   509 PVPDSKGEETAKDAEAEQKVDGDKETSAKDKS------EG---DSPNI----ETPKKAT----NG 556
            ||.|..|.:...:|     :|...:.|||:.:      :|   |:..|    |.|.:|.    ||
Mosquito   121 PVEDRHGAKVFFEA-----LDEFNDVSAKELNATVTMLDGRLEDAEEIFLRLEDPTQANLFAKNG 180

  Fly   557 N---SSIKSPQKTPKKSAEKPTDAAMD-------VDNVAPEEPKKAVEQEVDSSSSNDEYYEPTL 611
            .   :|:|...:.....:..|....:.       ||:....|.....:| ::..|..|..|  .:
Mosquito   181 KFLLTSLKYQLQGCAIMSNNPLSLTVCNKRFRFLVDHAVTAEGNDLTDQ-LNKMSLKDRLY--VI 242

  Fly   612 AELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKL 676
            ...|.               |||:|  |: |..|...::..:      :..:||.|:....||| 
Mosquito   243 LRTTK---------------LTLLD--DS-KAAQHGHQQRMY------SLANIGGLDTTISELK- 282

  Fly   677 AVLAPVKYPEMLE-RLGLTAPS--------GVLLCGPPGCGKTLLAKAIA--------------- 717
                     |:|| ..|:.:..        |:||.|..|.|||:|..|:|               
Mosquito   283 ---------ELLEMAFGMDSKQTTVGPVSRGILLSGVSGVGKTMLVNALATHYHCHVVRINCSEV 338

  Fly   718 -------NEAGI----------------------------------------NFISV-------- 727
                   :||.:                                        :|:::        
Mosquito   339 FSKFYGESEANVSRQFAEVFDVHPKPAIVVVEELHNLCPKSTATDIVKRISQHFLTLLDSLHANV 403

  Fly   728 ---------------KGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDG 777
                           .|.||.:|:|||||||||..|:|||..||.:|||||.|::..:|| ...|
Mosquito   404 RGNRTVVIGTTDSVENGSELFSMWVGESERAVRDLFRRARQVAPSIIFFDEIDAIGGERS-AESG 467

  Fly   778 NNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILK 842
            ::...|::.|||||||||...|.|.|:|||||||:||.|::||||||.|:||..|:.:.|.||.:
Mosquito   468 SSVKERVLAQLLTEMDGVSVLKDVRIVAATNRPDLIDRALMRPGRLDRIVYVRLPDAAAREEIFR 532

  Fly   843 ATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHF 907
            ...|.  .|. |..|||.|:..:|.|.:|:::..:.::|::..|       :::.|...:..:||
Mosquito   533 IKLKT--IPT-ASTVDLAELVRRTAGCSGSEIEAICQEAALKGL-------ESSFDVETIEWEHF 587

  Fly   908 QEALQQLRPSVNEQDRKIYDKLRLKYAAPR 937
            :.||..:||      |...:.|||:   ||
Mosquito   588 EHALGVVRP------RTSPELLRLR---PR 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 142/530 (27%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 13/45 (29%)
AAA 699..830 CDD:278434 72/215 (33%)
AgaP_AGAP009548XP_001688268.1 AAA_16 273..411 CDD:289934 22/147 (15%)
AAA 303..523 CDD:214640 74/220 (34%)
AAA <419..521 CDD:278434 60/102 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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