DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and FIGN

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_047300819.1 Gene:FIGN / 55137 HGNCID:13285 Length:785 Species:Homo sapiens


Alignment Length:480 Identity:116/480 - (24%)
Similarity:204/480 - (42%) Gaps:89/480 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   506 GETPV-PDSKGEETAKDAEAE---QKVDGDKETSAKDKSEGDSPNIETP---------KKATNGN 557
            |.||: |.:....:|...:.:   ....||.::|..:.|.|...:.::|         .....||
Human   325 GLTPIAPSALTNSSASSLKRKAFYMAGQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNTNRGN 389

  Fly   558 SSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQE-----------------VDSSSSNDE 605
            ...:|.:.:  ..|.|||...|     :.|:.:|...|.                 ..||.|..:
Human   390 GFDRSAETS--SLAFKPTKQLM-----SSEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFGK 447

  Fly   606 YYEPTLAE--------LTNFLDNPPEEFAD----------PNFCLTLIDFVDAIKVMQPSAKREG 652
            |..|.::|        |::.:..|....|.          .|....|||.|....:.|.      
Human   448 YTSPVMSEHGDEHRQLLSHPMQGPGLRAATSSNHSVDEQLKNTDTHLIDLVTNEIITQG------ 506

  Fly   653 FITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA-PSGVLLCGPPGCGKTLLAKAI 716
                |...|:||..|:.::..:|..||.||...:...  |||| |..:||.||.|.|||||.:.|
Human   507 ----PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTALPRSILLFGPRGTGKTLLGRCI 565

  Fly   717 ANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSG 781
            |::.|..|..:.|..|:..::||:|:.:.|.|..||...|.|||..:.|.|.  .|...:.::..
Human   566 ASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLL--SSQVNEEHSPV 628

  Fly   782 TRIVNQLLTEMDGV----EERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILK 842
            :|:..:.|.::|.|    |::  :.::.||::|:.||.::.|  .....|.:..|:.:.|.:|:.
Human   629 SRMRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIV 689

  Fly   843 ATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLC------ 901
            ...  .:.....:|.:...:..:|||::|.|:|.|.::|.:..|...   ..|:|..:.      
Human   690 QLL--SQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVVGPLHAM---PATDLSAIMPSQLRP 749

  Fly   902 VRSQHFQEALQQLRPSVNEQDRKIY 926
            |..|.|:.|..:::||:::::..:|
Human   750 VTYQDFENAFCKIQPSISQKELDMY 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 116/480 (24%)
FIGNXP_047300819.1 RecA-like_fidgetin 513..676 CDD:410931 55/170 (32%)
AAA_lid_3 701..>732 CDD:465537 9/30 (30%)
Vps4_C <749..782 CDD:462762 7/26 (27%)
Blue background indicates that the domain is not in the aligned region.

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