DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and NVL

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_016856867.1 Gene:NVL / 4931 HGNCID:8070 Length:917 Species:Homo sapiens


Alignment Length:1025 Identity:389/1025 - (37%)
Similarity:538/1025 - (52%) Gaps:226/1025 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DHLITIRVKKYLEEHIGETYLDVKQMTRELMQKYP-EYSRRKFGPFRQLVHQAFSIIS---ESYN 70
            |:.:..||.:||..:....|:|:..:..:|.:.|. :|.|||...||..|.:.|||||   |..|
Human    10 DNKLKQRVIQYLTSNKCGKYVDIGVLASDLQRVYSIDYGRRKRNAFRIQVEKVFSIISSEKELKN 74

  Fly    71 LDKV------------------------------------------------------SSSEEDC 81
            |.::                                                      |.|::|.
Human    75 LTELEDEHLAKRARQGEEDNDVSLCHPGFSALAQSWLTAVLTSQAQAILPPQPHRYTESYSDDDS 139

  Fly    82 VSEDSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISEPIDISSGDENEDDSNTKTTNGDGVAAAAA 146
            ..||...|.:.:.||:.:.|||   ||       ..|..:|:..|.|....|.:|.... :...:
Human   140 SMEDYPDPQSANHMNSSLLSLY---RK-------GNPDSVSNTPEMEQRETTSSTPRIS-SKTGS 193

  Fly   147 PPPPTPAVQGSALKRLMEEVP---------EIAVAAKKVAKPNTIHVSSSEAIQKLHQVVGNRAK 202
            .|..||| :.|.....:::.|         :::.......||.| .:..|:....|...:..:.|
Human   194 IPLKTPA-KDSEGGWFIDKTPSVKKDSFFLDLSCEKSNPKKPIT-EIQDSKDSSLLESDMKRKGK 256

  Fly   203 NLSEDAVPRSKDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEML 267
            ..::.:..:.:|.:.|.|..:.:.|.:::      .|.||.|.....|.|:||.|.||||:|:||
Human   257 LKNKGSKRKKEDLQEVDGEIEAVLQKKAK------ARGLEFQISNVKFEDVGGNDMTLKEVCKML 315

  Fly   268 IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISG-------------------------- 306
            ||::.||.|..||::|.||:|||||||||||.||.||:|                          
Human   316 IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGAECSGMITAHCSFDFSGSNDPPASAS 380

  Fly   307 -QLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRI 370
             :|.:|::::.|.|::.|:|||||:::||:|:||:..:||::||||||||...|:.|||||||||
Human   381 QELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRI 445

  Fly   371 VSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCE 435
            |:||::.:|:|........|:||.||.|||.|||.|||.||||.||.:.||....|..||:..|.
Human   446 VAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCR 510

  Fly   436 GLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDE 500
            .|.:....::..:|.||||:||||||||...||..||.|..||    |....:||          
Human   511 KLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMK----LQEQQKKN---------- 561

  Fly   501 PSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQK 565
                                                        |.:|                 
Human   562 --------------------------------------------PEME----------------- 565

  Fly   566 TPKKSAEKPTDAAMDVDNVAPEEPKKAVEQE----VDSSSSNDEYYEPTLAELTNFL--DNPPEE 624
                                 :.|.|.|::|    ..:|.:.||     |..|...|  .:|..|
Human   566 ---------------------DLPSKGVQEERLGTEPTSETQDE-----LQRLLGLLRDQDPLSE 604

  Fly   625 FADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLE 689
            ......|:.|.||:.|:..:|||||||||:|||:.||.||||||.|||||.:|:||||:.|:..:
Human   605 EQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFK 669

  Fly   690 RLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNS 754
            .|||..|:||||.|||||||||||||:|||:|:||||||||||:||||||||||||..||||:||
Human   670 ALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 734

  Fly   755 APCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILR 819
            |||||||||.|:|||:|||...|  :..|:||||||||||:|.|:.|:|:|||||||||||||||
Human   735 APCVIFFDEVDALCPRRSDRETG--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILR 797

  Fly   820 PGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAA--QTEGYTGADLAGLVKQAS 882
            |||||..|:||.|..::|..|||..||||.:|.|..||:|:.||.  :.:.||||||:.||::||
Human   798 PGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREAS 862

  Fly   883 MFSLRQSL--NNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLR 930
            :.:|||.:  ........:|.|..:||:||.:::|.|::::|:.:|::|:
Human   863 ICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQIMYERLQ 912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330 22/64 (34%)
SpoVK 271..919 CDD:223540 309/684 (45%)
AAA 287..418 CDD:278434 76/157 (48%)
P-loop_NTPase 679..>716 CDD:304359 25/36 (69%)
AAA 699..830 CDD:278434 101/130 (78%)
NVLXP_016856867.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158214
Domainoid 1 1.000 210 1.000 Domainoid score I2813
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1902
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S933
OMA 1 1.010 - - QHG53526
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102053
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2802
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.670

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