DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and LOC4397685

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_001230510.2 Gene:LOC4397685 / 4397685 VectorBaseID:AGAMI1_013526 Length:826 Species:Anopheles gambiae


Alignment Length:731 Identity:222/731 - (30%)
Similarity:335/731 - (45%) Gaps:198/731 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 LYQQLHQNQSRDRLRKFKRDLEV---------QHPTE----SFRDIGGMDST---LKELCEMLIH 269
            |..||::...:|||....|..::         ||..:    |..:|||:|:|   ||||.||...
Mosquito   265 LTDQLNKMSLKDRLYVILRTTKLTLLDDSKAAQHSHQQRMYSLTNIGGLDTTIAELKELLEMAFG 329

  Fly   270 IKSPEFYFQLGLLP-SRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERI- 332
            :.|.    |..:.| |||:||.|..|.|||.|..|::......::.:..:|:.....||||..: 
Mosquito   330 MDSK----QTTVGPVSRGILLSGVSGVGKTMLVNALATHYHCHVVRLNCSEVFSKFYGESEANVS 390

  Fly   333 ---REVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIA 394
               .||||  :...|.::.::|:..:....  .:.|:.:||....::.||:|.||..|...|||.
Mosquito   391 RQFAEVFD--VHPKPAMVVVEELHNLCPKS--TATDIVKRISQHFLTLLDSLHANVRGNRTVVIG 451

  Fly   395 ATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR--IQCEGLSVDPKLNYDKIAELTPGYVG 457
            .|...|.::|.|||.||.|:|..:.:|....|..||.  :...|.:| |:.:...:|.:|.||||
Mosquito   452 TTDSVDNVNPLLRRGGRMDYEFELPVPDAIARAAILERVLSRHGQTV-PEEDIRAVARITHGYVG 515

  Fly   458 ADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDA 522
            |||..|||:|||.|                                       |..|        
Mosquito   516 ADLENLVSKAASSA---------------------------------------PTGK-------- 533

  Fly   523 EAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPE 587
                .:||                                                         
Mosquito   534 ----PIDG--------------------------------------------------------- 537

  Fly   588 EPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREG 652
                                 |.|                          :.|::.::|||.||.
Mosquito   538 ---------------------PAL--------------------------MAALQHVKPSAMREI 555

  Fly   653 FITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIA 717
            .|..|:..|.|||..::::.:|:..:..|:.:||:.||||:..|.|:|:.|||||.||::|||||
Mosquito   556 MIECPNVRWTDIGGQDELKLKLRQIIDWPIHHPELFERLGIKPPRGLLMFGPPGCSKTMIAKAIA 620

  Fly   718 NEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGT 782
            .|:.:||:|:||.||.:|:|||||||||..|:|||..||.:|||||.|::..:|| ...|::...
Mosquito   621 TESRLNFLSIKGSELFSMWVGESERAVRDLFRRARQVAPSIIFFDEIDAIGGERS-AESGSSVKE 684

  Fly   783 RIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKN 847
            |::.|||||||||...|.|.|:|||||||:||.|::||||||.|:||..|:.:.|.||.....|.
Mosquito   685 RVLAQLLTEMDGVSGLKDVRIVAATNRPDLIDRALMRPGRLDRIVYVRLPDAAAREEIFHIKLKT 749

  Fly   848 GKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQ 912
              .|. |..|||.|:..:|.|.:|:::..:.::|::..|       :::.|...:..:||:.||.
Mosquito   750 --IPT-ASTVDLAELVRRTAGCSGSEIEAICQEAALKGL-------ESSFDVETIEWEHFEHALG 804

  Fly   913 QLRPSVNEQDRKIYDK 928
            .:||..:.:..::|::
Mosquito   805 VVRPRTSPELLRLYEE 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 215/710 (30%)
LOC4397685XP_001230510.2 None
Blue background indicates that the domain is not in the aligned region.

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