Protein Alignment smid and Rpt5

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_524464.1
• Gene: Rpt5 / 42805
• FlyBaseID: FBgn0028684
• Length: 428
• Species: Drosophila melanogaster
• Alignment Length: 472
• Identity: 134/472 - (28%)
• Similarity: 221/472 - (46%)
• Gaps: 78/472 - (16%)

  Fly   495 TLDDDEPSEDAGETPVPDSKGEETAKDAEAE-----QKVDGD-----------------KETSAK 537
            ||:|....|| ||    :|.|||..:.:..|     :.:|.:                 :....|
  Fly     4 TLEDKSIWED-GE----ESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIRITHEIQAQNEKIK 63

  Fly   538 DKSEGDSPNIETPKKATNGNSSIK-SPQKTPKKSAEKPTDAAMDV-DNVAPEEPKKAVEQEVDSS 600
            |.:|....|...|...:|....:. .||       |:..|.::.| ||      ::..:..|..:
  Fly    64 DNTEKIKVNKTLPYLVSNVIELLDVDPQ-------EEEDDGSVTVLDN------QRKGKCAVIKT 115

  Fly   601 SSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLI------DFVDAIKVMQPSAKREGFITVPDT 659
            |:...|:.|.:. |.:.....|.:....|....||      ::...:|.|:...:       |..
  Fly   116 STRQAYFLPVIG-LVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDER-------PTE 172

  Fly   660 TWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINF 724
            .:.|||.|:|..:||..||:.|:.:.|..:.||:..|.||||.||||.||||||:|.|.:....|
  Fly   173 QYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 237

  Fly   725 ISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGD-GNNSGTRIVNQL 788
            :.:.||:|:.|::|:..:.||..|..|:..||.:||.||.|::..||.|... |:....|.:.:|
  Fly   238 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 302

  Fly   789 LTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVL 853
            |.::||......:.::|||||.||:|||:||.||||..:....|.:..|..|::.   :.::..:
  Fly   303 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQI---HSRKMNV 364

  Fly   854 ADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSV 918
            ::||:.:|::..|:.:.||....:..:|.|.:||:|.|:         |..:.|.:|:.::
  Fly   365 SNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSANS---------VTHEDFMDAIMEV---- 416

  Fly   919 NEQDRKIYDKLRLKYAA 935
              |.:|   |..|.|.|
  Fly   417 --QAKK---KANLNYYA 428

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	128/454 (28%)
		AAA	287..418	CDD:278434
		P-loop_NTPase	679..>716	CDD:304359	19/36 (53%)
		AAA	699..830	CDD:278434	57/131 (44%)
Rpt5	NP_524464.1	RPT1	33..421	CDD:224143	118/429 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910