DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and CG14183

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_649172.3 Gene:CG14183 / 40192 FlyBaseID:FBgn0036931 Length:872 Species:Drosophila melanogaster


Alignment Length:943 Identity:195/943 - (20%)
Similarity:345/943 - (36%) Gaps:255/943 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LKRLMEEVPEIAVAAKKVAKPNTIHVSSSEAIQKLHQVVGN------RA--KNLSEDAVPRSKDH 215
            ||:: |...|.||:.|..|:...::|   |.:.||..:..|      ||  :.|.|:|.      
  Fly    27 LKKI-EPPEEKAVSYKIYAELYVLYV---ELVNKLSFIYHNTFQVQKRALVRVLVENAT------ 81

  Fly   216 RNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQ-- 278
                   |||.|      |::..:|||:.......:.:.....|.::    |:..:||:|.::  
  Fly    82 -------QQLMQ------LKEELKDLEMSEYIYIDKALIARKLTPRD----LVVWRSPQFLYRRP 129

  Fly   279 ---LGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIR--EVFDQ 338
               ..::....|.::......|       :.|..:|:.|  |.:||     ::.||.|  .|:..
  Fly   130 LDIQNIIADNRLYMNDEEKEEK-------AAQDWVPISE--AVKLI-----QAHERARRARVYKS 180

  Fly   339 AIGY-SPCVLFIDEIDAIGGNRQWASK-DMERRI-VSQLISSLDNLKANEFGQSVVVIAATTRPD 400
            .|.| ....|.:.:...|  |.::..| |....| |.:.|.|.|.|||:|..::::     .:.|
  Fly   181 NIKYDKKKFLKVHQRKKI--NYKFTFKPDQAMSIPVKRTIFSADFLKADESCENLI-----KKDD 238

  Fly   401 VLDPGL---RRIGRFDHEIAIHIPS---RKERREILRI------QCEGLSVDPKLN--------- 444
            |.|..:   ..:....:..|..|.|   ..:.|:|::|      :..|:....||.         
  Fly   239 VADTAIDDEEALSAIQNNAACKIQSCWRGYKTRKIVKIRKRFKEELYGMKKIRKLKRPNQTANSI 303

  Fly   445 ---YDKIAELTPGYVGADLMALVSRAASVAVKRRS---MKK--------FRELHAAS-------- 487
               |..  |:....:..|.:.|::...:..::.||   |:.        |:|.:.|:        
  Fly   304 MEMYKN--EMLKKKLDEDFINLINDERTRLLQFRSPWMMEDISDHIRAWFKEFYDATGNFHPYPD 366

  Fly   488 --EKNMTTVTLDDDEPSEDAGETPVP----DSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPN 546
              ::....|.:|         ||..|    :|.|::....||.::..|.:|:...|.|.:.....
  Fly   367 PVKQGTVLVVID---------ETMTPMEFQESLGKKPLSKAELKKLRDKEKKEKRKKKEKLKQLK 422

  Fly   547 IETPKK--------------ATNGNSSIKSPQKTPKKSAE--KPTDAAMD-----VDNVAPEEPK 590
            ::..|:              ....:.:|::.::|.||.::  :..|..::     :.....||..
  Fly   423 MKEAKRRKKLRDAGVIDIGYELTASKAIENIEETMKKYSKDWRNVDEYLNKNHDPIKEWVTEEQL 487

  Fly   591 KAVEQEVDSSSSNDEY----YEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKRE 651
            ..:.|||  ....|||    ||.....|..  ||      |..:        .|:||..|..|:|
  Fly   488 AKIHQEV--RGLVDEYMRVEYELLREALAK--DN------DEKY--------KALKVKYPKKKKE 534

  Fly   652 GFITVP-DTTWD-----------DIGALEKI-------------------REELKLAVLAPVK-- 683
            .....| |.|.|           |.|.:|:|                   |:|..|..|.|.|  
  Fly   535 KRKKKPKDMTGDRTLESLYNELKDAGIIEEIGHRDFDEFITDFNFVADDTRDEDGLTTLGPAKGD 599

  Fly   684 ----YPEMLERLG---LTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 741
                ..|.:..:|   :..|..:||.||...||.||.:.||:|....|::: .||....|..:.:
  Fly   600 IKMVIQESMLGMGEFDVPKPKSLLLIGPLNSGKRLLCEIIASELDAVFMNL-SPENTYKYAKDLK 663

  Fly   742 RAVRACFQRARNSAPCVIFFDE----FDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVY 802
            ..:....:.|:...|.:::.:|    |....|..:...:....||.:.:::|..:   ::...:.
  Fly   664 YFLHVILKVAKAFQPTIMYIEEAHRLFWKKVPPEAVEINPRLLGTSLASKILKPL---KKNDKIV 725

  Fly   803 ILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEI---LKATTKNGKRPVLADDVDLDE--- 861
            ::..:|.|...:..|.|  ....:|.:  |:....|..   |:..|:|      |.| |:.|   
  Fly   726 LVGTSNMPWAANGGIKR--AFQKVLLI--PKCDYGTSFLLWLELMTEN------APD-DMKEYAY 779

  Fly   862 --IAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRK 924
              :|...:.|...|:...||:......:..|.|  ..||.    ::..:..|.:..|.:...|.|
  Fly   780 SALARVLQAYNSGDIDDNVKETLNIDRKMRLKN--EALDP----NEFLEYFLSKNEPPIFPPDEK 838

  Fly   925 IYD-------------KLRLKYAAPRVPTLNDK 944
            |.|             |||..|.|.::...:.|
  Fly   839 IMDKFNKWFGSSNKLEKLRKSYMAQKLAKASKK 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 157/783 (20%)
AAA 287..418 CDD:278434 31/138 (22%)
P-loop_NTPase 679..>716 CDD:304359 14/45 (31%)
AAA 699..830 CDD:278434 28/134 (21%)
CG14183NP_649172.3 AAA 622..751 CDD:278434 28/136 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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