DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and atad1b

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001019592.1 Gene:atad1b / 368412 ZFINID:ZDB-GENE-030616-44 Length:362 Species:Danio rerio


Alignment Length:383 Identity:116/383 - (30%)
Similarity:174/383 - (45%) Gaps:89/383 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   563 PQKTPKKSAEKPTDAAM---DVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEE 624
            |.:..|..|:|..:..|   .|.||...|                  ||.::|          ..
Zfish    47 PTRKQKVEAQKQAEKLMRQIGVQNVKLSE------------------YEMSIA----------AH 83

  Fly   625 FADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLE 689
            ..||   ||:                       ..||.||..|:::..|||..|:.|::...:.|
Zfish    84 LVDP---LTM-----------------------QITWYDIAGLDEVITELKDTVILPIQKRHLFE 122

  Fly   690 --RLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRAR 752
              || |..|.||||.|||||||||:|||.|.|||..||:::...|.:.:.|||::...|.|..|.
Zfish   123 GSRL-LQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAI 186

  Fly   753 NSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVN-QLLTEMDGVEERKG--VYILAATNRPDIID 814
            ...|.:||.||.||....||   ..::..|.::. |.::..||::....  |.|:.|||||..:|
Zfish   187 KLQPSIIFIDEIDSFLRNRS---SSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLD 248

  Fly   815 PAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVK 879
            .||||  |:.|..::..|...:|.:|||...:|..   :...|:|.|||.||:|::|:||..:.:
Zfish   249 SAILR--RMPTRFHINQPNARQRKDILKLILENEN---VESAVELSEIAKQTDGFSGSDLREMCR 308

  Fly   880 QASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQ--LRPSVNEQDRKIYDKLRLKYAA 935
            .|::                ||||....||:.::  :||...|..::..:|::...:|
Zfish   309 DAAL----------------LCVRDFVHQESPEEDFIRPIRQEDLQRAIEKMKKSKSA 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 115/379 (30%)
atad1bNP_001019592.1 SpoVK 3..339 CDD:440232 114/370 (31%)
RecA-like_ATAD1 96..261 CDD:410928 69/170 (41%)
Blue background indicates that the domain is not in the aligned region.

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