DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and Fign

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001259995.1 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster


Alignment Length:584 Identity:154/584 - (26%)
Similarity:244/584 - (41%) Gaps:118/584 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 ASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKER 426
            |.||...|:  |...|::........:.:.:...|.|      |:...|     ....:|    .
  Fly    30 ALKDHHARL--QACESMEKAMKERCQKKITMSRRTKR------GITHAG-----YLFEMP----H 77

  Fly   427 REILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASV-----AVKRRSMKKFRELHAA 486
            ..:...:|.|.       |:...:..  ...:||.|.....:|.     |||.|...:|.|    
  Fly    78 NSVFEPECRGF-------YESCQQTE--MASSDLQAPALEVSSTYPVQQAVKSRPEGQFPE---- 129

  Fly   487 SEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKV-DGDKETSAKDKSEGDS-PN--I 547
             .:|.:|..:|..:.|   .|:......|..||:    ||.: |..|:.:.:..||.|: |.  :
  Fly   130 -SRNNSTKKIDAQQYS---SESSSQSGFGFRTAR----EQLIMDELKKKNRQATSEVDAVPTGMM 186

  Fly   548 ETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLA 612
            ...||...|..::.|...:|                         |.|..:|:||......|.||
  Fly   187 NFRKKTLGGKRTVSSNFVSP-------------------------VAQNDNSTSSRSSSIPPALA 226

  Fly   613 ELTNFLDNPPEEFADPNFCLTLIDFV--DAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELK 675
            .|.:                .::|.:  :::...:|.|            |:||..||..:....
  Fly   227 HLDS----------------KMVDHILGESMHDFKPVA------------WEDIAGLESAKSTFL 263

  Fly   676 LAVLAPVKYPEMLERLGLTA-PSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGE 739
            .|::.|::.|::.  .|:.. |.||||.||||.||||:||:||::|...|.|:....|.:.:||:
  Fly   264 EAIIMPLRRPDLF--TGVRCPPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGD 326

  Fly   740 SERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV--EERKGVY 802
            :|:.|:..|..|....|.:||.||.|||..|||  .:.|.|..|:.|:.|..:||.  .|...|.
  Fly   327 AEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRS--ANENESTLRLKNEFLIHLDGAASNEEIRVL 389

  Fly   803 ILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTE 867
            ::.|||||..:|.|:.|  |....|||..|.:..|.:|::......|..:  |...:.|:|..|:
  Fly   390 VIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNL--DVRQVIELAELTD 450

  Fly   868 GYTGADLAGLVKQASMFSLRQSLNNGDTNLDDL----CVRSQHFQEALQQLRPSVNEQDRKIYD 927
            ||:|||:..|.:.|||..|| ||......:.:.    .|....|::||:.:..||:.:|.|.::
  Fly   451 GYSGADVDTLCRYASMAPLR-SLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFE 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 151/574 (26%)
AAA 287..418 CDD:278434 10/55 (18%)
P-loop_NTPase 679..>716 CDD:304359 18/37 (49%)
AAA 699..830 CDD:278434 56/132 (42%)
FignNP_001259995.1 AAA 282..418 CDD:214640 59/139 (42%)
AAA 286..416 CDD:278434 57/133 (43%)
Vps4_C <480..520 CDD:286426 8/34 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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