DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and Fign

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001099954.1 Gene:Fign / 295649 RGDID:1308174 Length:759 Species:Rattus norvegicus


Alignment Length:481 Identity:113/481 - (23%)
Similarity:203/481 - (42%) Gaps:91/481 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   506 GETPV-PDSKGEETAKDAEAE---QKVDGDKETSAKDKSEGDSPNIETP---------KKATNGN 557
            |.||: |.:....:|...:.:   ....||.::|..:.|.|...:.::|         ..:..||
  Rat   299 GLTPIAPSALTNSSASSLKRKAFYMAGQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNSNRGN 363

  Fly   558 SSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVD------------------SSSSND 604
            ...::.:.:  ..|.|||...|      |.|.::....:..                  ||.|..
  Rat   364 GFDRNAETS--SLAFKPTKQLM------PSEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFG 420

  Fly   605 EYYEPTLAE--------LTNFLDNPPEEFAD----------PNFCLTLIDFVDAIKVMQPSAKRE 651
            :|..|.::|        |.:.:..|....|.          .|....|||.|....:.|.     
  Rat   421 KYTSPVMSEHGDDHRQLLAHPIQGPGLRAATSSNHSVDEQLKNTDTHLIDLVTNEIITQG----- 480

  Fly   652 GFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA-PSGVLLCGPPGCGKTLLAKA 715
                 |...|.||..|:.::..:|..||.||...:...  |||| |..:||.||.|.|||||.:.
  Rat   481 -----PPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTALPRSILLFGPRGTGKTLLGRC 538

  Fly   716 IANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNS 780
            ||::.|..|..:.|..|:..::||:|:.:.|.|..||...|.|||..:.|.|.  .|...:.::.
  Rat   539 IASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLL--SSQVSEEHSP 601

  Fly   781 GTRIVNQLLTEMDGV----EERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEIL 841
            .:|:..:.|.::|.|    |::  :.::.||::|:.||.::.|  .....|.:..|:.:.|.:|:
  Rat   602 VSRMRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQII 662

  Fly   842 KATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLC----- 901
            ....  .:.....:|.:...:..:|||::|.|:|.|.::|::..|...   ..|:|..:.     
  Rat   663 VQLL--SQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAM---PATDLSAIMPSQLR 722

  Fly   902 -VRSQHFQEALQQLRPSVNEQDRKIY 926
             :..|.|:.|..:::||:::::..:|
  Rat   723 PITYQDFENAFCKIQPSISQKELDMY 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 113/481 (23%)
FignNP_001099954.1 RecA-like_fidgetin 487..650 CDD:410931 55/170 (32%)
AAA_lid_3 675..>706 CDD:465537 9/30 (30%)
Vps4_C <723..756 CDD:462762 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.