DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Trip13

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001011930.1 Gene:Trip13 / 292206 RGDID:1308516 Length:432 Species:Rattus norvegicus


Alignment Length:273 Identity:68/273 - (24%)
Similarity:115/273 - (42%) Gaps:50/273 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   646 PSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEM-LERLGLTAPSGVLLCGPPGCGK 709
            |:|:..|.       ||.:....:::..|...|:..:.:.:. ::...:|....|||.||||.||
  Rat   128 PAAEFHGL-------WDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGK 185

  Fly   710 TLLAKAIANEAGI---------NFISVKGPELMNMYVGESERAVRACFQRARN-----SAPCVIF 760
            |.|.||:|.:..|         ..|.:....|.:.:..||.:.|...||:.::     .|...:.
  Rat   186 TSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKEALVFVL 250

  Fly   761 FDEFDSLCPKRS--DGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRL 823
            .||.:||...|:  ..|...:...|:||.:||::|.::....|.||..:|..:.||.|.:  .|.
  Rat   251 IDEVESLTAARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRA 313

  Fly   824 DTILYVGFPEQ--------SERTEILKATTKNGKRPVLA-----------DDVD-----LDEIAA 864
            |...|:|.|..        |...|::|......::.:|.           ::|.     |.||:.
  Rat   314 DIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLSEISR 378

  Fly   865 QTEGYTGADLAGL 877
            ::||.:|..|..|
  Rat   379 KSEGLSGRVLRKL 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 68/273 (25%)
Trip13NP_001011930.1 McrB 34..>205 CDD:441011 23/83 (28%)
RecA-like_Pch2-like 121..319 CDD:410916 52/199 (26%)
Blue background indicates that the domain is not in the aligned region.

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