Sequence 1: | NP_523959.2 | Gene: | smid / 38824 | FlyBaseID: | FBgn0016983 | Length: | 944 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_033529.3 | Gene: | Vcp / 269523 | MGIID: | 99919 | Length: | 806 | Species: | Mus musculus |
Alignment Length: | 709 | Identity: | 252/709 - (35%) |
---|---|---|---|
Similarity: | 365/709 - (51%) | Gaps: | 161/709 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 238 KRDLEVQHPTE-SFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFL 300
Fly 301 ARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKD 365
Fly 366 MERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREIL 430
Fly 431 RIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVT 495
Fly 496 LDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSI 560
Fly 561 KSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEF 625
Fly 626 ADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLER 690
Fly 691 LGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSA 755
Fly 756 PCVIFFDEFDSLCPKRSDG-GDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILR 819
Fly 820 PGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMF 884
Fly 885 SLRQSLNNG--------------DTNLDDLC--VRSQHFQEALQQLRPSVNEQDRKIYD 927 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
smid | NP_523959.2 | Nucleolin_bd | 2..71 | CDD:293330 | |
SpoVK | 271..919 | CDD:223540 | 238/664 (36%) | ||
AAA | 287..418 | CDD:278434 | 58/130 (45%) | ||
P-loop_NTPase | 679..>716 | CDD:304359 | 20/36 (56%) | ||
AAA | 699..830 | CDD:278434 | 84/131 (64%) | ||
Vcp | NP_033529.3 | CDC48 | 25..764 | CDD:273521 | 252/709 (36%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 708..727 | 1/18 (6%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 768..806 | ||||
Interaction with UBXN6. /evidence=ECO:0000250 | 797..806 | ||||
PIM motif. /evidence=ECO:0000250|UniProtKB:P55072 | 802..806 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0464 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D169540at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000137 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |