Protein Alignment smid and prx-6

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_504268.1
• Gene: prx-6 / 266912
• WormBaseID: WBGene00004195
• Length: 720
• Species: Caenorhabditis elegans
• Alignment Length: 648
• Identity: 158/648 - (24%)
• Similarity: 259/648 - (39%)
• Gaps: 215/648 - (33%)

  Fly   287 LLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLF--- 348
            ||:.|..|.||..::|..:.:......|:...|::...:..||.:....:::|.....||||
 Worm   261 LLVTGASGSGKRLMSRVFASETHRNFFEVDGYEMVCENASTSEAKWTSWWEKAKLLQNCVLFIRN 325

  Fly   349 -----IDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRR 408
                 ||:.:|           ::|||:..:     ..|.:|..:..|:.:..|  |.:.
 Worm   326 SNVLAIDQFNA-----------LDRRILQYM-----EQKLSEPSKITVIFSCNT--DTMS----- 367

  Fly   409 IGRFDHEIAIHIPSRKERREILRIQCEGLSVDPK---LNY---DKIAELTPGYVGADLMALVSRA 467
                      .:|:..:...:.....|.:..:.:   |.|   :|:|.
 Worm   368 ----------SMPANVKNLALYTFSAEFMDENDRKTWLQYYLNEKLAN----------------- 405

  Fly   468 ASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDK 532
                            |.|.:.:..|:                           ||.|:.|...|
 Worm   406 ----------------HVAKKTSGFTL---------------------------AELEKLVKNGK 427

  Fly   533 ETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEV 597
            :...::|.|                                                 |..|..:
 Worm   428 KVKIEEKEE-------------------------------------------------KVYEDLI 443

  Fly   598 DSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWD 662
            |..:||                                 |.|||          |...:|:..|:
 Worm   444 DKRNSN---------------------------------FADAI----------GAPKIPNVRWE 465

  Fly   663 DIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISV 727
            |:|.||:.::.:..::...:.....|:|      ||::|.|.|||||||:|||:|.|..|.|:||
 Worm   466 DVGGLEETKQTVLESIRTNLFGSRALKR------SGIILYGSPGCGKTLIAKAVATEFKIAFLSV 524

  Fly   728 KGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEM 792
            |||||:|.|||:||..:|..|:||:.::||||||||.|||.|.|...||......|||:|||.|:
 Worm   525 KGPELLNKYVGQSEENLRKVFERAKQASPCVIFFDEIDSLAPNRGRNGDSGGVIDRIVSQLLAEL 589

  Fly   793 DGVEER--KGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSE-RTEILKATTKNGKRPVLA 854
            |.:...  ..|:::.||||||::|.:::.|||.|.::.|...|..| :|:||:|.::..:   ..
 Worm   590 DKLHNSPLTKVFVMGATNRPDLLDNSLMTPGRFDKLVEVKPGEDVESKTKILEAVSRKMR---FE 651

  Fly   855 DDVDLDEIAAQT-EGYTGADLAGLVKQASMFSL---RQSLNNGDTNLDDLCVRSQHFQEALQQ 913
            :||||.|||::. |..:||.|..::..|.|.::   .||:.:|.|....:.|..:|..|::::
 Worm   652 EDVDLREIASKVDEKMSGAQLFSIISNAGMAAIVETIQSIEDGKTENQSIRVAQRHLLESVKR 714

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	158/648 (24%)
		AAA	287..418	CDD:278434	27/138 (20%)
		P-loop_NTPase	679..>716	CDD:304359	15/36 (42%)
		AAA	699..830	CDD:278434	68/132 (52%)
prx-6	NP_504268.1	CDC48	<261..714	CDD:273521	158/646 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810