Protein Alignment smid and Psmc2

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_150239.2
• Gene: Psmc2 / 25581
• RGDID: 3428
• Length: 433
• Species: Rattus norvegicus
• Alignment Length: 524
• Identity: 152/524 - (29%)
• Similarity: 227/524 - (43%)
• Gaps: 126/524 - (24%)

  Fly   453 PGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEP--SEDAGETPVPDSKG 515
            |.|:|||                 .:|.:|    .||        ||:|  :.|.|:..:..:.|
  Rat     2 PDYLGAD-----------------QRKTKE----DEK--------DDKPIRALDEGDIALLKTYG 37

  Fly   516 EET----AKDAEAE--------QKVDGDKETS-----------AKDKSEGDSPNIETPKKATNGN 557
            :.|    .|..|.:        .::.|.||:.           |.||....|   |.|.:.....
  Rat    38 QSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQS---EQPLQVARCT 99

  Fly   558 SSIKSPQKTP------KKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTN 616
            ..|.:..:.|      |:.|:...|.:   |.|||.:.::.:...||.:..  :.:.|.
  Rat   100 KIINADSEDPKYIINVKQFAKFVVDLS---DQVAPTDIEEGMRVGVDRNKY--QIHIPL------ 153

  Fly   617 FLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAP 681
                ||:  .||           .:.:||...|       ||.|:.|:|..::..|:|:..|..|
  Rat   154 ----PPK--IDP-----------TVTMMQVEEK-------PDVTYSDVGGCKEQIEKLREVVETP 194

  Fly   682 VKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRA 746
            :.:||....||:..|.||||.||||.||||.|:|:||.....||.|.|.||:..||||..|.||.
  Rat   195 LLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 259

  Fly   747 CFQRARNSAPCVIFFDEFDSLCPKR-SDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRP 810
            .|:.||....|:|||||.|::...| .||..|:|...|.:.:|:.::||.:.|..:.:|.|||||
  Rat   260 LFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 324

  Fly   811 DIIDPAILRPGRLDTILYVGFPEQSERTEILK--ATTKNGKRPVLADDVDLDEIAAQTEGYTGAD 873
            |.:|||::||||||..:....|:...||.|.|  |.:.:.:|     |:..:.:|......|||:
  Rat   325 DTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVER-----DIRFELLARLCPNSTGAE 384

  Fly   874 LAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYAAPRV 938
            :..:..:|.||::|....         ....:.|.||:.::        .|.|.|..   |.||.
  Rat   385 IRSVCTEAGMFAIRARRK---------IATEKDFLEAVNKV--------IKSYAKFS---ATPRY 429

  Fly   939 PTLN 942
            .|.|
  Rat   430 MTYN 433

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	144/499 (29%)
		AAA	287..418	CDD:278434
		P-loop_NTPase	679..>716	CDD:304359	19/36 (53%)
		AAA	699..830	CDD:278434	64/131 (49%)
Psmc2	NP_150239.2	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..22		11/48 (23%)
		RPT1	23..430	CDD:224143	138/469 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910