DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and cdc48

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_593287.2 Gene:cdc48 / 2542744 PomBaseID:SPAC1565.08 Length:815 Species:Schizosaccharomyces pombe


Alignment Length:708 Identity:243/708 - (34%)
Similarity:360/708 - (50%) Gaps:160/708 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 KRDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLA 301
            :.|.|.......:.||||....:.::.|:: :.::.|:.:..:|:.|.||:|::||||.|||.:|
pombe   211 REDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMA 275

  Fly   302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
            ||::.:.......|...|::..::||||..:|:.|::|...||.::||||||:|...|:..:.::
pombe   276 RAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEV 340

  Fly   367 ERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR 431
            |||:||||::.:|.:||.   .:|||:|||.||:.:||.|||.||||.|:.:.||....|.||||
pombe   341 ERRVVSQLLTLMDGMKAR---SNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILR 402

  Fly   432 IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTL 496
            |..:.:.:...::.::||..|.||||:||.:|.|.||        |::.||       .|..:.|
pombe   403 IHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAA--------MQQIRE-------KMDMIDL 452

  Fly   497 DDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIK 561
            |:||.     :..|.||.|                                              
pombe   453 DEDEI-----DAEVLDSLG---------------------------------------------- 466

  Fly   562 SPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFA 626
                                                                             
pombe   467 ----------------------------------------------------------------- 466

  Fly   627 DPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERL 691
                 :|:.:|..|:....|||.||..:.||:..|:|||.||:::.||:..|..||.|.|...|.
pombe   467 -----VTMDNFRFALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRF 526

  Fly   692 GLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAP 756
            |:|...|||..||||.||||||||||||...||||||||||::|:.||||..||..|.:||.:||
pombe   527 GVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAP 591

  Fly   757 CVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPG 821
            ||:|.||.||:...|......:..|.|:|||||||||||..:|.|:::.||||||.||||::|||
pombe   592 CVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPG 656

  Fly   822 RLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSL 886
            |||.::||..|::..|..||:...::  .|| |:||||..:|..|.|::||||..:|::|...::
pombe   657 RLDQLIYVPLPDEEARFSILQTQLRH--TPV-AEDVDLRAVAKATHGFSGADLEFVVQRAVKLAI 718

  Fly   887 RQSL--------NNGDTNLDDLC---------VRSQHFQEALQQLRPSVNEQDRKIYD 927
            :.|:        ..|:...||:.         |:..|.:||::..|.||::.:.:.|:
pombe   719 KDSIEEDIKRENETGEAPADDVVMDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYE 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 234/664 (35%)
AAA 287..418 CDD:278434 58/130 (45%)
P-loop_NTPase 679..>716 CDD:304359 21/36 (58%)
AAA 699..830 CDD:278434 80/130 (62%)
cdc48NP_593287.2 CDC48_N 45..127 CDD:280513
CDC48 58..782 CDD:273521 243/708 (34%)
CDC48_2 151..209 CDD:215011
AAA 261..390 CDD:278434 58/131 (44%)
AAA 534..666 CDD:278434 81/131 (62%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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