DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and SPBC16E9.10c

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_595792.1 Gene:SPBC16E9.10c / 2539968 PomBaseID:SPBC16E9.10c Length:779 Species:Schizosaccharomyces pombe


Alignment Length:941 Identity:327/941 - (34%)
Similarity:501/941 - (53%) Gaps:206/941 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LEEHIGETYLDVKQMTREL-MQKYPEYSRRKFGPFRQLVHQAFSIISESYNLDKVSSSEEDCVSE 84
            ||..|.|..:.:|...::. ::::|..:||..    |.|                  .|.|....
pombe    12 LERKIHERLVSLKDTIQQTEIEEWPVSTRRAI----QFV------------------QERDMSLR 54

  Fly    85 DSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISEPIDISSGDENEDDSNTKTTNGDGVAAAAAPPP 149
            ..:.|....|:..::::|.::..:.||..  .:.:.:.|..|.:.|||                 
pombe    55 RIKKPILEKVVEKVLDTLKAEVEEKLASS--QDLVLVDSDMEEQSDSN----------------- 100

  Fly   150 PTPAVQGSALKRLMEEVPEIAVAAKKV----AKPNTIHVSSSEAIQKLHQVVG-NRAKNLSEDAV 209
                         :.||.:..|..|.:    :.||            |.::.| :..|::.::::
pombe   101 -------------LMEVKDTNVINKSITSLWSSPN------------LKEIDGEDEKKSVGQESI 140

  Fly   210 PRS---KDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTE-SFRDIGGMDSTLKELCEML-IH 269
            ..|   ||.|:        ..|.|    ::.|.:...:.|:: |..||||:|..:.||.|:: :.
pombe   141 TGSAKRKDRRS--------KTNGS----KRQKAEANREPPSDISLSDIGGLDDCINELLELVAMP 193

  Fly   270 IKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIRE 334
            ||.||.|...|:.|.||:|||||||||||.||.|::.:|.:|.:.|.|..::.|:|||||:::||
pombe   194 IKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVRE 258

  Fly   335 VFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEF-GQSVVVIAATTR 398
            ||::|...:||::|||||||:...|:.|.::||||||:|.::.:|.|...:. |:.|:||.||.|
pombe   259 VFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNR 323

  Fly   399 PDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMAL 463
            ||.||..|||.||||.||.:.:||:..|.:|||...:||.:....::.::|:.|||||||||.||
pombe   324 PDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKAL 388

  Fly   464 VSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKV 528
            .:.|..:|:||    .|.|:                                             
pombe   389 TAAAGIIAIKR----IFNEI--------------------------------------------- 404

  Fly   529 DGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAV 593
                                :|....:.||.       |:.: |..:|.|:|.::..|       
pombe   405 --------------------SPLNKLDLNSD-------PRFN-ELDSDMALDSNDSLP------- 434

  Fly   594 EQEVDSSSSNDEYYEPTLAELTNFLDNP--PEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITV 656
               :|.||....|        .|...:|  |||......|..  ||::|:..:|||:|||||.||
pombe   435 ---LDHSSIIQRY--------LNAHPDPLSPEELEPLAICPQ--DFIEALAKVQPSSKREGFATV 486

  Fly   657 PDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAG 721
            |..:|::||||:.||.||::|::.|:|.||:.:.:|::||:||||.|||||||||||||:|||:.
pombe   487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESK 551

  Fly   722 INFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVN 786
            .||||::||||:|.||||||||||..|.|||.|:||||||||.|::.|:|.|  ..:.:.:|:||
pombe   552 ANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDD--SLSEASSRVVN 614

  Fly   787 QLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRP 851
            .||||:||:.:|.|||::||||||||||||:|||||||..|.|..|:..||.||||..|   |:.
pombe   615 TLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLT---KQT 676

  Fly   852 VLADDVDLDEIA--AQTEGYTGADLAGLVKQASMFSLRQSL------NNGD----TNLDDLCVRS 904
            .|.::|:||.:.  .:...::|||||.||::|::.:||.::      |..:    :.|:.:.|.:
pombe   677 PLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTN 741

  Fly   905 QHFQEALQQLRPSVNEQDRKIYDKLRLKYAA 935
            ..|:.|.:.::|||:::||:.|.:|..::::
pombe   742 ADFELAFKNIKPSVSDRDRQKYQRLAKRWSS 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330 10/50 (20%)
SpoVK 271..919 CDD:223540 273/662 (41%)
AAA 287..418 CDD:278434 69/131 (53%)
P-loop_NTPase 679..>716 CDD:304359 23/36 (64%)
AAA 699..830 CDD:278434 88/130 (68%)
SPBC16E9.10cNP_595792.1 DnaC 89..>280 CDD:224401 78/244 (32%)
SpoVK 191..756 CDD:223540 274/666 (41%)
AAA 211..341 CDD:278434 67/129 (52%)
AAA 529..659 CDD:278434 89/131 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 183 1.000 Domainoid score I784
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1902
Inparanoid 1 1.050 534 1.000 Inparanoid score I211
OMA 1 1.010 - - QHG53526
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102053
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1718
SonicParanoid 1 1.000 - - X2802
TreeFam 1 0.960 - -
1312.860

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