DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and pex1

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_587770.1 Gene:pex1 / 2539405 PomBaseID:SPCC553.03 Length:937 Species:Schizosaccharomyces pombe


Alignment Length:873 Identity:211/873 - (24%)
Similarity:337/873 - (38%) Gaps:292/873 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 PPTPAVQGSALKRLMEE---VPEIAVAAKKVAKP------------NTIHVSSSEAIQKLHQVVG 198
            ||      |:.|.::|:   .||..::::.||..            ..:.::.|.::..|..||.
pombe   268 PP------SSSKFILEQKGLPPESNLSSELVAAKLKNSYLMDGMTLKLVDIAVSYSVSGLSGVVK 326

  Fly   199 NRAKNL---SEDAVPRSKDHRNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTL 260
            |..:::   |:..||.:...||          |..|..::.|..:                    
pombe   327 NPIQDIKITSDTNVPVNAGIRN----------NSPRLSMQPFPHE-------------------- 361

  Fly   261 KELCEMLIHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMP----LMEIPATELI 321
                  ...:::..|..|       .:.::||.||||:.|..::.....:.    .|.:..:|:.
pombe   362 ------FAQVRNAVFLHQ-------NIYINGPKGCGKSNLVHSLFDYYSLNSIYFQMIVSCSEID 413

  Fly   322 GGISGESEERIREVFDQAIGYSPCVLFIDEIDAI--GGNRQWASKDMERRIVSQLISSLDNLKAN 384
            .....:.:.....||.||..|.|.::::|::..:  ..|.......:|.|.::.|...:.|||..
pombe   414 RSSFAKFQSFWNNVFIQAERYEPSIIYLDDVHCLISSSNENGELGFVEEREIAFLQHQIINLKRK 478

  Fly   385 E------FGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSR--KERREIL-RIQCEGLSVD 440
            .      ||:..:    |...:::.|.|       .:|.|.:||.  ..|:||| .|..|..|..
pombe   479 RKIIFIGFGEEFL----TFSENLVLPLL-------FQIKIALPSLAVTRRKEILTTIFQENFSDI 532

  Fly   441 PKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDA 505
            ...:.:.|:..|.||:..||:..|.|..|                                    
pombe   533 TMDSIEFISVKTEGYLMTDLVLFVKRLLS------------------------------------ 561

  Fly   506 GETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKS 570
                           :|..|:..:|                   ||...|               
pombe   562 ---------------EAFVEKIQNG-------------------PKHLMN--------------- 577

  Fly   571 AEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLI 635
                               |..:|:                                     ||.
pombe   578 -------------------KGLIEK-------------------------------------TLK 586

  Fly   636 DFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVL 700
            |||       |...|:.........|.||..:::.:|.::..:.:||||..:.::..|..|:|:|
pombe   587 DFV-------PLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGIL 644

  Fly   701 LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFD 765
            |.|.||||||.||.||::...:.|||:|||||::.|:|:||:.||..|.||:.:.|||:||||||
pombe   645 LFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFD 709

  Fly   766 SLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVG 830
            |:.|:|  |.|......|:|||:||:|||.|...||||:|||.|||:||||:|||||||.:::..
pombe   710 SVAPRR--GQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCD 772

  Fly   831 FPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSL-----RQSL 890
            .|.:.||.|:|:   |...|..:.:...|.:::..|:|||.|||:.|:..|.:.::     |.|:
pombe   773 LPNEEERLEVLQ---KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVSI 834

  Fly   891 NNGD--------TNLDDLCVR-------------SQHFQ----------------EALQQLRPSV 918
            |..|        |||.....|             :|:.|                |||::..||:
pombe   835 NAVDPSQTTSSFTNLTTESKRNASMLALPPESRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSL 899

  Fly   919 NEQD----RKIYDKLRLKYAAPRVPTLN 942
            |.::    ..:|...|.|...|.:...|
pombe   900 NSEEFEHLSNLYRDFRSKLFEPELNARN 927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 183/704 (26%)
AAA 287..418 CDD:278434 29/142 (20%)
P-loop_NTPase 679..>716 CDD:304359 18/36 (50%)
AAA 699..830 CDD:278434 75/130 (58%)
pex1NP_587770.1 PEX-1N 90..164 CDD:286361
SpoVK 355..832 CDD:223540 169/673 (25%)
AAA 375..510 CDD:278434 30/145 (21%)
AAA 643..773 CDD:278434 75/131 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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