DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and Iqca1l

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_808344.3 Gene:Iqca1l / 231045 MGIID:3045319 Length:825 Species:Mus musculus


Alignment Length:847 Identity:168/847 - (19%)
Similarity:291/847 - (34%) Gaps:239/847 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LKRLMEEVPEIAVAAKKVAKPNTIHVSSSEAIQKLHQVVG---NR---------AKNLSEDA--- 208
            |.|::::: ::..|..:|..|....:..|.|::...|::.   ||         .:.||..|   
Mouse   102 LDRVLQDL-KLTPADLEVPIPKYFQLEQSSAVKARQQMLADILNRLEPLVSQENLRGLSRTAALI 165

  Fly   209 ----VPRSKDHRNVPGLYQQLHQNQSRDR------LRKFKRD---LEVQHPTESFRDIGGMDSTL 260
                ..|::..|......:::.:.:.|||      .:||.||   :.:|...:.:.....::...
Mouse   166 LVQSAERARQGRLRATFMREIRKEEERDRRIWENGQQKFSRDQGAIVIQKVWKGYLQRKRIEQDR 230

  Fly   261 KELCEMLIHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGIS 325
            :  .||       ||   :|:|||                          |........|.....
Mouse   231 R--VEM-------EF---IGMLPS--------------------------PNQTARLNTLNQAFL 257

  Fly   326 GESEERIREV-----FDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQ----------LI 375
            ||...|:|:|     |.:|||.:     .:.:....|      .||:.|:..|          |.
Mouse   258 GEESRRMRQVEKEEEFQEAIGKT-----YESLTETEG------PDMKERMKDQIRQWFIECHALT 311

  Fly   376 SSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVD 440
            ....:......|.|.::.|..|...|         |.|.|.... .|||:.:|           .
Mouse   312 GRFPDYPDEASGGSYLIFADKTPEQV---------RLDLEAQAQ-ESRKKDQE-----------K 355

  Fly   441 PKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKK-----FRELHA-------ASEKNMTT 493
            .:.|.:|..|             ........||...:||     ||.|.:       |..:..|:
Mouse   356 KEKNKEKEKE-------------KKEKKKKKVKEEKVKKEPEVMFRVLPSKSIPVINAGHEEYTS 407

  Fly   494 V---TLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATN 555
            |   ..|:..||::...    ::..||..|..|.|.:|..|:..    :.|..:..:...::.|.
Mouse   408 VWKSRYDNKHPSQNFDS----ETLREEKRKQVEMEIRVQVDELM----RQELKNLRLAVDREETR 464

  Fly   556 GNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDN 620
                   |.|:|||...|             :..||..|:::....|.|..:|.           
Mouse   465 -------PLKSPKKKGGK-------------KSGKKKKEKDLTPDRSVDSLFEE----------- 498

  Fly   621 PPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYP 685
                       |.:|..:          |:...:|:.|.    ||....:...|.||...|:  |
Mouse   499 -----------LVIIGLI----------KKSALVTLSDY----IGDCLYLGSTLTLANKMPM--P 536

  Fly   686 EMLE-----------RLG-----LTAP--SGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPEL 732
            .:.:           |||     ..||  ..:||.||.|.||.:|.:|:..|.|.|...:....|
Mouse   537 SLFDIRQNMALYGVLRLGSHDIHTMAPLVRSILLVGPSGMGKKMLVQAVCTETGANLFDLSPDNL 601

  Fly   733 MNMYVGE--SERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV 795
            |..|.|:  ::..|...|:.||...|.||:....:....|:....:......||...|:.....:
Mouse   602 MGKYPGKNGAQLLVHIVFKVARLLQPSVIWIGNTEKTFYKKVPKEERTMDPKRIKKDLMRATKQL 666

  Fly   796 EERKGVYILAATNRPDIID-PAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPV-LADDVD 858
            .....|.::..|.||.:.: ..:.|  ..:.||::..|:.:.|..:.|...::..|.| |...:|
Mouse   667 SPGDRVMLIGTTERPQLAEMKGLCR--FYERILFIPRPDYASRYVLWKRMIESQGRGVQLTSSLD 729

  Fly   859 LDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDR 923
            :..:|..::|||.:.:...::  |:.:.|:.|     .|....:.:..|...|.:|.|...|::.
Mouse   730 VSALARVSDGYTPSHILQSIQ--SVLTERRLL-----QLIKKPLVASEFVGHLARLDPVYREEEE 787

  Fly   924 KI 925
            .:
Mouse   788 SL 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 142/699 (20%)
AAA 287..418 CDD:278434 25/145 (17%)
P-loop_NTPase 679..>716 CDD:304359 15/54 (28%)
AAA 699..830 CDD:278434 34/133 (26%)
Iqca1lNP_808344.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..378 9/58 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 459..487 10/47 (21%)
SpoVK <566..745 CDD:223540 45/180 (25%)
AAA 568..701 CDD:278434 34/134 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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