DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Pex6

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_663463.1 Gene:Pex6 / 224824 MGIID:2385054 Length:981 Species:Mus musculus


Alignment Length:698 Identity:201/698 - (28%)
Similarity:319/698 - (45%) Gaps:172/698 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 GMDSTLKELCEMLIHIKSPEFYFQLG---LLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIP 316
            |:::.:.|||.:|    .|  :.|.|   |..:..:||.||||.|||....|...:|.:.|:::|
Mouse   438 GLEALVNELCAIL----KP--HLQPGGTLLTGTSCVLLQGPPGSGKTTAVTAACSRLGLHLLKVP 496

  Fly   317 ATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNL 381
            .:.|....|...|.:::..|.:|....|.||.:..:|.:|.:|....:|      :::.::|.:|
Mouse   497 CSSLCADSSRAVETKLQATFSRARRCRPAVLLLTAVDLLGRDRDGLGED------ARVAATLRHL 555

  Fly   382 KANEFGQS----VVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPK 442
            ..:|...|    ::|:|.|:|...|...::.  .|.||:.:.:.|..:|..||:.....|.:..:
Mouse   556 LLDEDALSRCPPLMVVATTSRVQDLPTDVQT--AFPHELEVPVLSEAQRLSILQALTAHLPLGQE 618

  Fly   443 LNYDKIAELTPGYVGADLMALVS---RAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSED 504
            :|..::|....|:|..||.||::   |||...::                           .|..
Mouse   619 VNLPQLARRCAGFVVGDLYALLTHTCRAACTRIR---------------------------ASGS 656

  Fly   505 AGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKK 569
            ||                            ...::.|||                          
Mouse   657 AG----------------------------GLSEEDEGD-------------------------- 667

  Fly   570 SAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTL 634
                     :.|...                        |.|||                     
Mouse   668 ---------LCVAGF------------------------PLLAE--------------------- 678

  Fly   635 IDFVDAIKVMQPS-AKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSG 698
             ||..|:..:|.: ::..|...:|..:|.|:|.|:.:::|:...:..|:::||:|. |||.. ||
Mouse   679 -DFGQALDQLQTAHSQAVGAPRIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SG 740

  Fly   699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDE 763
            :||.||||.||||||||:|.|..:.|:|||||||:|||||:||..||..|.|||.:|||:|||||
Mouse   741 LLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDE 805

  Fly   764 FDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILY 828
            .|||.|.|...||......|:|:|||.|:||:...:.|:::.||||||::|||:|||||.|.:::
Mouse   806 LDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVF 870

  Fly   829 VGFPE-QSERTEILKATTKNGKRPVLADDVDLDEIA-AQTEGYTGADLAGLVKQASMFSLRQSLN 891
            ||..| ::.:..:|.|.|:..|   |...|.|..:. ......|||||..|...|.|.:|::.:.
Mouse   871 VGASEDRASQLRVLSAITRKFK---LEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 932

  Fly   892 NGDTNLD----DLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYAA 935
            :.:..|:    .|.:..:...:|..:|:|||:||:...|.:::.|:||
Mouse   933 DLEEGLELRSSALLLTMEDLLQAAARLQPSVSEQELLRYKRIQRKFAA 980

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 198/694 (29%)
Pex6NP_663463.1 CDC48 <467..978 CDD:273521 189/659 (29%)
Blue background indicates that the domain is not in the aligned region.

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