DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and cdc-48.1

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_496273.1 Gene:cdc-48.1 / 174624 WormBaseID:WBGene00007352 Length:809 Species:Caenorhabditis elegans


Alignment Length:892 Identity:279/892 - (31%)
Similarity:417/892 - (46%) Gaps:248/892 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 DENEDDSNTKTTNGDGVAAAAAPPPPTPAVQGSAL----KRLMEEVPEIAVAAKKVAKPNTIHVS 185
            |::|.|.|:.      :|.:.|........:|.|:    |:..|.|   |:.....:.||     
 Worm    35 DQSEQDDNSV------IAVSQAKMDELGLFRGDAVILKGKKRKESV---AIIVSDESCPN----- 85

  Fly   186 SSEAIQKLHQVVGNR-------------AKNLSE----DAVPRSKDHRNVPG------------- 220
              |.: ::::||.|.             |.|||.    ..:|.......:.|             
 Worm    86 --EKV-RMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLE 147

  Fly   221 LYQQLHQN-----QSRDRLRKF--------------------------KRDLEVQHPTE-SFRDI 253
            .|:.||:.     |:..|..:|                          ||:.|.:...: .:.|:
 Worm   148 AYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDL 212

  Fly   254 GGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPA 317
            ||:...|.::.||: :.::.|:.:..:|:.|.||:||.||||.|||.:|||::.:.......|..
 Worm   213 GGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANETGSFFFLING 277

  Fly   318 TELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLK 382
            .|::..:|||||..:|:.|::.....|.:|||||||||...|:..:.::||||||||::.:|.:|
 Worm   278 PEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVK 342

  Fly   383 ANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDK 447
            ..   .::||||||.||:.:|..|||.||||.||.|.||....|.|||||..:.:.:...::.::
 Worm   343 GR---SNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQ 404

  Fly   448 IAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPD 512
            ||....|:|||||.:|.|.||        :::.||       .|..:.|:||             
 Worm   405 IANECHGFVGADLASLCSEAA--------LQQIRE-------KMELIDLEDD------------- 441

  Fly   513 SKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDA 577
                                                                             
 Worm   442 ----------------------------------------------------------------- 441

  Fly   578 AMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIK 642
                              ::|             ||:.|.|            .:|:.:|..|..
 Worm   442 ------------------QID-------------AEVLNSL------------AVTMENFRFAQG 463

  Fly   643 VMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGC 707
            ...|||.||..:..|:|||.|||.|:.::.||:..|..||::||...:.|:....|||..|||||
 Worm   464 KSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGC 528

  Fly   708 GKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRS 772
            ||||||||||||...||||:|||||:.|:.||||..||..|.:||.:||||:||||.||:...|.
 Worm   529 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARG 593

  Fly   773 D--GGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQS 835
            .  ||||..:..|::||:||||||:..:|.|:|:.|||||||||||:|||||||.::|:..|:::
 Worm   594 GGAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEA 658

  Fly   836 ERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLN--------- 891
            .|.:||||:.:  |.| |:.|:||..:|..|.|::||||..:.::|...::|:|:.         
 Worm   659 SRHQILKASLR--KTP-LSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKER 720

  Fly   892 -----NGDTNLDDLCV------RSQHFQEALQQLRPSVNEQDRKIYD 927
                 .|:..::|..|      ...||:||::..|.||.:.|.:.|:
 Worm   721 QDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYE 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 237/669 (35%)
AAA 287..418 CDD:278434 60/130 (46%)
P-loop_NTPase 679..>716 CDD:304359 20/36 (56%)
AAA 699..830 CDD:278434 84/132 (64%)
cdc-48.1NP_496273.1 CDC48_N 31..112 CDD:280513 18/93 (19%)
CDC48 52..775 CDD:273521 273/869 (31%)
CDC48_2 137..197 CDD:215011 6/59 (10%)
AAA 247..376 CDD:278434 60/131 (46%)
AAA 520..654 CDD:278434 84/133 (63%)
Vps4_C <727..771 CDD:286426 12/41 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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