DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and cdc-48.3

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_492211.1 Gene:cdc-48.3 / 172586 WormBaseID:WBGene00010562 Length:724 Species:Caenorhabditis elegans


Alignment Length:769 Identity:200/769 - (26%)
Similarity:312/769 - (40%) Gaps:258/769 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 IHVSSSEAIQKLHQVVGNRAKNLSEDAVPRSKDHRNVPGLYQQL----HQNQSRDRLRKFKRDLE 242
            :.|:..|.|:.....:|     :.:|....||......|...|:    .:..:.|.|:....||.
 Worm   187 VTVTPEEPIESKMSAMG-----IDDDKKRNSKVVSTAVGYKIQILNASAEGSTSDVLQTLPTDLS 246

  Fly   243 VQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQLGLLPSR------GLLLHGPPGCGKTFLA 301
                     :|||. .|.|::.|..:            :.|.|      .:|:.|.||.|||.|.
 Worm   247 ---------NIGGC-FTAKQVLEDYV------------ISPVRQKESPCSVLIWGLPGSGKTLLL 289

  Fly   302 RAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDM 366
            :.::      |:...:|..||     |.|.:.|:.....|.   ::.:|                
 Worm   290 KEVA------LVLSGSTTYIG-----SCEELMELNGVTTGN---IVIVD---------------- 324

  Fly   367 ERRIVSQLISSLDNLKANEF------GQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKE 425
                |::|  ..:|.|||..      .:...||......:.||.|.|  .||..|..|.:|::.|
 Worm   325 ----VNEL--EKENTKANRALSFLLGDEKKCVILCVRSSETLDIGFR--VRFPIEAEITVPTQDE 381

  Fly   426 RREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKN 490
            |.:||.......:...:|:.| :|..|.|:.|.||.:|: :||..|..|..:::..         
 Worm   382 RLDILSKIGNIYNFPLELHLD-VARHTHGFTGGDLCSLL-KAAKFARGRTHLERVN--------- 435

  Fly   491 MTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATN 555
                                                                             
 Worm   436 ----------------------------------------------------------------- 435

  Fly   556 GNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDN 620
                                                                             
 Worm   436 ----------------------------------------------------------------- 435

  Fly   621 PPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYP 685
                              ||.|.::|:..|:..:.||:.:|:|||..|:::.|::.||:.|.|:|
 Worm   436 ------------------DARKRIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHP 482

  Fly   686 EMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQR 750
            |..||.|:..|:|:||.|||||.|||:|:|:|:||.:||::||||||.:.:||:||:|:|..|.|
 Worm   483 EAFERFGIDPPAGILLYGPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSR 547

  Fly   751 ARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGT--RIVNQLLTEMDGVEERKGVYILAATNRPDII 813
            ||..||.::||||.|::...|   |...:||.  |::.|||||:||:|:...|.:||||||||.:
 Worm   548 ARQVAPTIVFFDEIDAVGSSR---GSEKSSGVSDRVLAQLLTELDGLEKSSRVILLAATNRPDQL 609

  Fly   814 DPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDV--DLDEIAAQTEGYTGADLAG 876
            |.|:|||||||..:|||.|.:..|..||:..||..|    .||.  .:|::..:|.||:||:|..
 Worm   610 DSALLRPGRLDRAIYVGLPCEVTRRAILEMRTKKMK----FDDTVRTIDKLVEKTSGYSGAELVA 670

  Fly   877 LVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLR 930
            :.:.|:||::|:|       :|...|:..||::||..:.........:|||..:
 Worm   671 VCRTAAMFAMRES-------IDATIVQWTHFEQALAAVVSRTEAYLLEIYDDFK 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 187/705 (27%)
cdc-48.3NP_492211.1 CDC48 <247..720 CDD:273521 187/695 (27%)
Blue background indicates that the domain is not in the aligned region.

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