DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and AgaP_AGAP001612

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_321486.4 Gene:AgaP_AGAP001612 / 1281560 VectorBaseID:AGAP001612 Length:835 Species:Anopheles gambiae


Alignment Length:679 Identity:178/679 - (26%)
Similarity:296/679 - (43%) Gaps:196/679 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 GLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSP 344
            |:.|.  .:|.|..|.||..:.|:::..|.:|:.....:|::..||.::|.::...|::|....|
Mosquito   330 GIYPV--FMLRGERGIGKMAVLRSVASALGIPIYYADCSEIMTSISSQTETKLSTAFNKAKVCEP 392

  Fly   345 CVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRI 409
            .::.::..:..|.:.:...   ::||.....:.|..|...::...|||:|...:.:...|.|..:
Mosquito   393 LIICLENFEVFGVDNEGHE---DQRITGSFQAELMTLFGRQYSHPVVVVAVANQKESNTPKLTSL 454

  Fly   410 GRFDHEIAIHIPSRKERREILRIQCEGLSVD-----PKLNYDKIAELTPGYVGADLMALVSRAAS 469
              |...|.:|.|:..||.|:||    .:|:.     |.....||||.:.|:..|||..|...|  
Mosquito   455 --FLEVIQLHAPTTAERLELLR----WISLGHRYRLPVAQLQKIAEQSQGFTLADLELLYGNA-- 511

  Fly   470 VAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKET 534
                   ::.:|.                   |:|.|...:                        
Mosquito   512 -------LEAWRR-------------------SQDTGRVGL------------------------ 526

  Fly   535 SAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDS 599
                                                                             
Mosquito   527 ----------------------------------------------------------------- 526

  Fly   600 SSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLID-----FVDAIKVMQPSAKREGFITVPDT 659
                                         |..|.|:|     |.|::          |...||..
Mosquito   527 -----------------------------NHFLALLDHMQSTFSDSL----------GAPKVPKV 552

  Fly   660 TWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINF 724
            .|.:||.|.|::.|::.::..|:::..::.:  ....||:||.||||.||||:|||:|.|..::|
Mosquito   553 LWSEIGGLAKLKSEIQNSIGLPLRHKHLMGK--NMRRSGILLYGPPGTGKTLIAKAVATECNLSF 615

  Fly   725 ISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLL 789
            :||:||||:|||||:||:.||..|.|||.::|||:|.||.|||.|.|...||......|:|:|:|
Mosquito   616 LSVQGPELLNMYVGQSEQNVREVFARARTASPCVLFLDELDSLAPNRGVSGDSGGVMDRVVSQML 680

  Fly   790 TEMDGVEERKG--VYILAATNRPDIIDPAILRPGRLDTILYVGFPE--QSERTEILKATTKNGKR 850
            :||||:.:..|  ::|||||||||:||||:|||||.|.:|||| |.  ..::..:|:|.|...: 
Mosquito   681 SEMDGISKDPGQQIFILAATNRPDLIDPALLRPGRFDKLLYVG-PSCTVEDKESVLRAVTGRFR- 743

  Fly   851 PVLADDVDLDEIA-AQTEGYTGADLAGLVKQASMFSLRQSLNN---GDT-----NLDDLCVRSQH 906
              ||:.:.|.:|| :..:..||||:..:...|.:.::|:::..   ||:     |.|.:.|....
Mosquito   744 --LAETLTLRKIAESLKQDMTGADMYSICSNAWLSAVRRTVKEAIAGDSIDEGLNADQVIVTEDD 806

  Fly   907 FQEALQQLRPSVNEQDRKIYDKLRLKYAA 935
            |:|::::..||::..|...:::|:..::|
Mosquito   807 FKESVKKFIPSISPADMAYFNQLKGNFSA 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 175/661 (26%)
AAA 287..418 CDD:278434 28/130 (22%)
P-loop_NTPase 679..>716 CDD:304359 15/36 (42%)
AAA 699..830 CDD:278434 78/132 (59%)
AgaP_AGAP001612XP_321486.4 SpoVK 337..819 CDD:223540 173/652 (27%)
P-loop_NTPase 339..461 CDD:304359 27/126 (21%)
AAA 590..723 CDD:278434 78/132 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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