DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and AgaP_AGAP001783

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_003435935.1 Gene:AgaP_AGAP001783 / 1281382 VectorBaseID:AGAP001783 Length:573 Species:Anopheles gambiae


Alignment Length:591 Identity:163/591 - (27%)
Similarity:253/591 - (42%) Gaps:135/591 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 CEGLSVDPKL----NYDKIAELTPG--------YVGADLMALVSRAASVAVKRRSMKKFRELHAA 486
            ||...:..::    |||.......|        .||  |...:.:...:.:::...|::.::...
Mosquito    14 CENTKLAREMAVMGNYDSAGIYYEGVLQMLRKLLVG--LSEPLQKGKWLMIQQEINKEYNQMKLI 76

  Fly   487 SEKNMTTVTLD-DDEPSEDAGETPVPDSKGEETA-KDAEAEQKVDGD------------------ 531
             :|.:|.:|:| .:.|.:....||:     .||| ||..|..:.|.|                  
Mosquito    77 -QKTLTEITMDLQNAPLQARIRTPL-----HETASKDPAAWFRADPDIWMPPASGGRGGGGGGPI 135

  Fly   532 ---------------------------KETSAKDKSEGDSPNIETPKKATN-------------- 555
                                       ..|:...|||.:..|..|...:|:              
Mosquito   136 DPDVWAPAPDMPPPDHRRAVAPRNQSRSSTALNRKSEVNRRNAATKSASTSTVGGRKTISQTARA 200

  Fly   556 -GNSSIKSPQKT-----PKKSAEKPTDA--AMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLA 612
             |.|.:....:|     .|.:.::.:.|  |.|..|...|:..|  |:..|....|:....|...
Mosquito   201 GGTSGMNGASRTGTLPRTKAAGQRGSTAPGASDATNGNGEKGDK--EKLGDDEEGNNGGDTPEEV 263

  Fly   613 ELTNFLDNPPEEFADPNFCLTLIDFVDAIK--VMQPSAKREGFITVPDTTWDDIGALEKIREELK 675
            | ..|   .|...||       :|.||.::  ::|.:         |:..||||..|.:.:..|:
Mosquito   264 E-RKF---EPASHAD-------VDLVDMLERDILQKN---------PNIHWDDIADLHEAKRLLE 308

  Fly   676 LAVLAPVKYPEMLERLGLTAP-SGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGE 739
            .||:.|:..|:..:  |:..| .|||:.||||.|||:||||:|.|.|..|.:|....|.:.|.||
Mosquito   309 EAVVLPMWMPDYFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGE 371

  Fly   740 SERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV---EERKGV 801
            ||:.||..|:.||..||..||.||.||||.:|....: :.:..|:.::||.:||||   |..|.|
Mosquito   372 SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE-HEASRRVKSELLVQMDGVSNDEATKIV 435

  Fly   802 YILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQT 866
            .:|||||.|..||.|:.|  ||:..:|:..|....|..:||...:..|   :.:.||:.:||.:.
Mosquito   436 MVLAATNFPWDIDEALRR--RLEKRIYIPLPNSEGREALLKINLREVK---VDESVDMRDIADRL 495

  Fly   867 EGYTGADLAGLVKQASMFSLRQSLNN---------GDTNLDDLCVRSQHFQEALQQLRPSVNEQD 922
            :||:|||:..:.:.|||.|:|:.:..         ....| ||.|..|.|:||:.:...||::.|
Mosquito   496 DGYSGADITNVCRDASMMSMRRKIAGLRPEQIRQLAKEEL-DLPVSKQDFKEAISKCNKSVSKDD 559

  Fly   923 RKIYDK 928
            ...|.:
Mosquito   560 LAKYQQ 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 160/580 (28%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 17/37 (46%)
AAA 699..830 CDD:278434 63/133 (47%)
AgaP_AGAP001783XP_003435935.1 Shadoo 184..>258 CDD:291660 14/75 (19%)
P-loop_NTPase 296..>350 CDD:304359 24/55 (44%)
AAA 327..465 CDD:214640 65/140 (46%)
AAA 331..463 CDD:278434 63/134 (47%)
Vps4_C <538..571 CDD:286426 9/28 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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