DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and AgaP_AGAP000625

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_310453.2 Gene:AgaP_AGAP000625 / 1271692 VectorBaseID:AGAP000625 Length:441 Species:Anopheles gambiae


Alignment Length:406 Identity:127/406 - (31%)
Similarity:186/406 - (45%) Gaps:94/406 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   568 KKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCL 632
            ||..:||   ..|.|..|.::..|.    .|||.|:.:               .||:        
Mosquito    76 KKGKKKP---VKDGDGAAKDDKSKG----NDSSDSDSD---------------DPEK-------- 110

  Fly   633 TLIDFVDAIKVMQPSAKREGFITV--PDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA 695
                     |.:|  ||.||.|.|  |...|.|:..||..:..||.||:.|:|:|.:.  .|...
Mosquito   111 ---------KKLQ--AKLEGAIVVEKPHVKWSDVAGLEGAKTALKEAVILPIKFPHLF--TGKRM 162

  Fly   696 P-SGVLLCGPPGCGKTLLAKAIANEA-GINFISVKGPELMNMYVGESERAVRACFQRARNSAPCV 758
            | .|:||.||||.||:.||||:|.|| ...|.||...:|::.::||||:.|:..|:.||...|.:
Mosquito   163 PWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFELARAHKPSI 227

  Fly   759 IFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV-EERKGVYILAATNRPDIIDPAILRPGR 822
            :|.||.||||..|||  :.:.|..||..:.|.:|.|| .:..||.:|.|||.|.|:|.||.|  |
Mosquito   228 VFIDEVDSLCSARSD--NESESARRIKTEFLVQMQGVGSDNDGVLVLGATNTPWILDSAIRR--R 288

  Fly   823 LDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLR 887
            .:..:|:..|::..|..:.|....|....:..|  :|..:|::|:|::|:|::.:|:.|.|..:|
Mosquito   289 FEKRIYIPLPDEHARLVMFKIHLGNTAHTLTED--NLRTLASKTDGFSGSDISIVVRDALMQPVR 351

  Fly   888 Q-------------SLNNGDTNLDDL---C------------------------VRSQHFQEALQ 912
            :             |..:..|..|||   |                        |......::|.
Mosquito   352 KVQTATHFKKVSGPSPVDKTTICDDLLVPCSPGDPGAIEMTWVDLPGDKLFEPPVTMNDMLKSLA 416

  Fly   913 QLRPSVNEQDRKIYDK 928
            ..:|:|||.|.|..||
Mosquito   417 STKPTVNEDDMKKLDK 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 120/395 (30%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 17/37 (46%)
AAA 699..830 CDD:278434 59/132 (45%)
AgaP_AGAP000625XP_310453.2 MIT_VPS4 5..69 CDD:239141
P-loop_NTPase 130..>186 CDD:304359 26/57 (46%)
AAA 163..299 CDD:214640 61/139 (44%)
AAA 167..297 CDD:278434 59/133 (44%)
Vps4_C 378..438 CDD:286426 11/55 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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