DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and AgaP_AGAP000616

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_310465.3 Gene:AgaP_AGAP000616 / 1271616 VectorBaseID:AGAP000616 Length:427 Species:Anopheles gambiae


Alignment Length:463 Identity:125/463 - (26%)
Similarity:211/463 - (45%) Gaps:74/463 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   500 EPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQ 564
            |.||:.||..:..|..|..::....:.::...|....:...|..:.|    :|..:....||..:
Mosquito    12 EDSEELGEEVLRMSTDELVSRTRLMDNEIKIMKSEVVRINHELQTQN----EKIKDNTEKIKVNK 72

  Fly   565 KTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQE--------VDSSSSNDEYYEPTLAELTN----- 616
            ..|...:.  ....:|||....|:....|..:        |..:|:...|:.|.:..:.:     
Mosquito    73 TLPYLVSN--VIELLDVDPQEEEDDGAVVVLDSQRKGKCAVIKTSTRQTYFLPVIGLVDSDKLKP 135

  Fly   617 ------------FLDNPPEEFADPNFCLTLIDFVDA-IKVMQPSAKREGFITVPDTTWDDIGALE 668
                        .|:..|.|:             || :|.|:...:       |...:.|||.|:
Mosquito   136 GDLVGVNKDSYLILETLPAEY-------------DARVKAMEVDER-------PTEQYSDIGGLD 180

  Fly   669 KIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELM 733
            |..:||..||:.|:.:.:..:.||:..|.||||.||||.||||||:|.|.:....|:.:.||:|:
Mosquito   181 KQIQELIEAVVLPMTHKDKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 245

  Fly   734 NMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGD-GNNSGTRIVNQLLTEMDGVEE 797
            .|::|:..:.||..|..|:..:|.:||.||.|::..||.|... |:....|.:.:||.::||...
Mosquito   246 QMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 310

  Fly   798 RKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEI 862
            ...:.::|||||.||:|||:||.||||..:....|.:..|..|::.   :.::..::.||:.:|:
Mosquito   311 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQI---HSRKMNVSPDVNFEEL 372

  Fly   863 AAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYD 927
            |..|:.:.||....:..:|.|.:||:|.         :.|..:.|.:|:.::      |.:|   
Mosquito   373 ARSTDDFNGAQCKAVCVEAGMIALRRSA---------VSVIHEDFMDAIMEV------QSKK--- 419

  Fly   928 KLRLKYAA 935
            |..|.|.|
Mosquito   420 KANLNYFA 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 119/445 (27%)
AAA 287..418 CDD:278434
P-loop_NTPase 679..>716 CDD:304359 18/36 (50%)
AAA 699..830 CDD:278434 56/131 (43%)
AgaP_AGAP000616XP_310465.3 RPT1 32..420 CDD:224143 114/434 (26%)
AAA 211..343 CDD:278434 56/131 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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