DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Pex6

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_063122650.1 Gene:Pex6 / 117265 RGDID:621637 Length:1034 Species:Rattus norvegicus


Alignment Length:754 Identity:205/754 - (27%)
Similarity:319/754 - (42%) Gaps:230/754 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 GMDSTLKELCEMLIHIKSPEFYFQLG---LLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIP 316
            |:::.:.|||.:|    .|  :.|.|   |..:..:||.||||.|||....|...:|.:.|:::|
  Rat   437 GLEALVNELCAVL----KP--HLQPGGTLLTGTSCVLLQGPPGSGKTTAVTAACSRLGLHLLKVP 495

  Fly   317 ATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNL 381
            .:.|....|...|.:::..|.:|....|.||.:..:|.:|.:|....:|      ::::::|.:|
  Rat   496 CSSLCADSSRTVETKLQTTFSRARRCRPVVLLLTALDLLGRDRDGLGED------ARVVATLRHL 554

  Fly   382 KANEFGQS----VVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPK 442
            ..:|...|    ::|:|.|:|...|...:|.  .|.||:.:.:.|..:|..:|:.....|.:..:
  Rat   555 LLDEDPLSRCPPLMVVATTSRVQDLPTDVRT--AFPHELEVPVLSESQRLSVLQALTAHLPLGQE 617

  Fly   443 LNYDKIAELTPGYVGADLMALV---SRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSED 504
            :|..::|....|:|..||.||:   ||||...:|...:       |.||              ||
  Rat   618 VNLSQLARRCAGFVVGDLYALLTHASRAACTRIKAAGL-------AMSE--------------ED 661

  Fly   505 AGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKK 569
            .||......                                                        
  Rat   662 EGELCAAGF-------------------------------------------------------- 670

  Fly   570 SAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTL 634
                                                   |.|||                     
  Rat   671 ---------------------------------------PLLAE--------------------- 675

  Fly   635 IDFVDAIKVMQPS-AKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSG 698
             ||..|:..:|.: ::..|...:|..:|.|:|.|:.:::|:...:..|:::||:|. |||.. ||
  Rat   676 -DFGQALDQLQTAHSQAVGAPKIPSVSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SG 737

  Fly   699 VLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDE 763
            :||.||||.||||||||:|.|..:.|:|||||||:|||||:||..||..|.|||.:|||:|||||
  Rat   738 LLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDE 802

  Fly   764 FDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILY 828
            .|||.|.|...||......|:|:|||.|:||:...:.|:::.||||||::|||:|||||.|.:::
  Rat   803 LDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVF 867

  Fly   829 VGFPE-QSERTEILKATTKNGKRPVLADDVDL-DEIAAQTEGYTGADLAGLVKQASMFSLRQSL- 890
            ||..| ::.:..:|.|.|:..|   |...|.| :.:.......|||||..|...|.|.:|::.: 
  Rat   868 VGASEDRASQLRVLSAITRKFK---LEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 929

  Fly   891 ------------NNGDTNLDD-------------------------------------------- 899
                        .|.:|..|.                                            
  Rat   930 DLEEGEPLPALDGNQETRGDSPGIPEERLSRRHLPRLLSYLGIDYSWGQGSGLTVPRHPSGLEPR 994

  Fly   900 ---LCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYAA 935
               |.:..:...:|..:|:|||:||:...|.:::.|:||
  Rat   995 SSALLLTMEDLLQAAARLQPSVSEQELLRYKRIQRKFAA 1033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 202/750 (27%)
Pex6XP_063122650.1 None
Blue background indicates that the domain is not in the aligned region.

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