DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and pex6

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_031758131.1 Gene:pex6 / 100491422 XenbaseID:XB-GENE-6049481 Length:896 Species:Xenopus tropicalis


Alignment Length:696 Identity:195/696 - (28%)
Similarity:308/696 - (44%) Gaps:157/696 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 GMDSTLKELCEMLIHIKSPEFYFQLGLLPSRG-LLLHGPPGCGKTFLARAISGQLKMPLMEIPAT 318
            |:...:.|:|.:|    .|.......:||:.| :|..|.|..||..:.:|...:|.:.|.:|...
 Frog   347 GLSHAVDEICRIL----QPYLEVSREVLPTGGRVLFSGSPSSGKKTVVKAACSRLNLHLYQIECA 407

  Fly   319 ELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKA 383
            .|....|..:..|::....:...::||::.:.:::.:|..|..:.:|  .|::|...|.|...:.
 Frog   408 RLCREGSAGNVARLKASLSRVPEFAPCLVLLSQVELLGRERDGSRED--GRVISAFRSLLLGGET 470

  Fly   384 NEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKI 448
            ......|:|:|.|:.|..:...::..  |.:|:::..|:.::|..:|......|.:...::..|:
 Frog   471 QARDLPVLVVATTSSPKEIPLDIQTC--FLNEVSLEPPTEEQRLSLLAALTAPLPLGRDVSITKL 533

  Fly   449 AELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPVPDS 513
            |..|.|:|..|..:|||||...|..|                                       
 Frog   534 ARTTAGFVLGDFCSLVSRAGLSASNR--------------------------------------- 559

  Fly   514 KGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQKTPKKSAEKPTDAA 578
                                                          |:|.:...::..|.|..|.
 Frog   560 ----------------------------------------------IRSSRPVTEEEGEGPLAAG 578

  Fly   579 MDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKV 643
            :                                                   .|...||.:|:..
 Frog   579 V---------------------------------------------------ALGAQDFQEALSA 592

  Fly   644 MQPS-AKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAPSGVLLCGPPGC 707
            :|.| |:..|...||...|.|:|.|..::.:|...|..|:::||:|. :||.. |||||.||||.
 Frog   593 LQDSQAEAVGAPKVPCVQWRDVGGLHDVKRQLLDTVQLPLEHPEVLS-MGLRR-SGVLLYGPPGT 655

  Fly   708 GKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRS 772
            ||||||||:|.|..:.|:|||||||:|||||:||..||..|.|||::|||:|||||.|||.|.|.
 Frog   656 GKTLLAKAVATECAMTFLSVKGPELINMYVGQSEENVRKVFSRARSAAPCIIFFDELDSLAPSRG 720

  Fly   773 DGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSE- 836
            ..||......|:|:|||.|:||:.....|:::.||||||::|.|:|||||.|.:||||..|:.: 
 Frog   721 RSGDSGGVMDRVVSQLLAELDGLNSSSDVFVIGATNRPDLLDSALLRPGRFDKLLYVGVNEERDS 785

  Fly   837 RTEILKATTKNGKRPVLADDVDLDEIAAQ-TEGYTGADLAGLVKQASMFSLR---QSLNNG-DTN 896
            :..:|.|.|:...   |...|||..:..: ....|||||..|...|.|.:::   |.|.:| ...
 Frog   786 QLRVLAAITRKFS---LDPSVDLSAVIERCPRAVTGADLYSLCADAMMGAVKERVQQLEDGHQQQ 847

  Fly   897 LDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLRLKYAAPRVPTLN 942
            ..:..|:.:||.:|..:|:|||...:.:.|:::|.:|:||..|.::
 Frog   848 TPEPLVKMEHFLQAANRLQPSVCVSELQRYERIRKQYSAPDSPAVS 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 191/685 (28%)
pex6XP_031758131.1 CDC48 <371..884 CDD:273521 185/657 (28%)
Blue background indicates that the domain is not in the aligned region.

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